Autodoc generation with quartodoc (#2419)

* quartodoc integration

* quartodoc progress

* deletions

* Update docs/.gitignore to exclude auto-generated API documentation files

* Fix

* more autodoc progress

* moving reference up near the top of the sidebar

* fix broken link

* update to reflect recent changes

* pydantic models refactor + add to autodoc + fixes

* fix

* shrinking header sizes

* fix accidental change

* include quartodoc build step

* update pre-commit version

* update pylint

* pre-commit

---------

Co-authored-by: Dan Saunders <dan@axolotl.ai>

.github/workflows/docs.yml

@@ -20,9 +20,11 @@ jobs:
           uses: actions/setup-python@v5
           with:
             python-version: '3.11'
-        - name: install dependencies
+        - name: Install dependencies
           run: |
-            python3 -m pip install jupyter
+            python3 -m pip install jupyter quartodoc
+        - name: Build autodoc
+          run: quartodoc build
         - name: Publish to GitHub Pages (and render)
           uses: quarto-dev/quarto-actions/publish@v2
           with: