Fix(doc): Minor doc changes for peft and modal (#2462) [skip ci]

* fix(doc): document peft configs

* fix(doc): explain modal env vs secrets difference

* fix(doc): clarify evaluate vs lm-eval

* fix: clarify what is performance

docs/cli.qmd

@@ -170,7 +170,7 @@ axolotl merge-sharded-fsdp-weights config.yml
 
 ### evaluate
 
-Evaluates a model's performance using metrics specified in the config.
+Evaluates a model's performance (loss etc) on the train and eval datasets.
 
 ```bash
 # Basic evaluation
@@ -197,6 +197,8 @@ lm_eval_batch_size: # Batch size for evaluation
 output_dir: # Directory to save evaluation results
 ```
 
+See [LM Eval Harness](https://github.com/EleutherAI/lm-evaluation-harness) for more details.
+
 ## Legacy CLI Usage
 
 While the new Click-based CLI is preferred, Axolotl still supports the legacy module-based CLI:
@@ -248,7 +250,7 @@ volumes:        # Persistent storage volumes
   - name: axolotl-artifacts
     mount: /workspace/artifacts
 
-env:            # Environment variables
+secrets:        # Secrets to inject
   - WANDB_API_KEY
   - HF_TOKEN
 ```
@@ -283,6 +285,18 @@ timeout_preprocess: # Preprocessing timeout
 branch:      # Git branch to use
 docker_tag:  # Custom Docker image tag
 volumes:     # List of persistent storage volumes
-env: # Environment variables to pass
-secrets: # Secrets to inject
+
+# Environment variables to pass. Can be specified in two ways:
+# 1. As a string: Will load the value from the host computer's environment variables
+# 2. As a key-value pair: Will use the specified value directly
+# Example:
+# env:
+#   - CUSTOM_VAR  # Loads from host's $CUSTOM_VAR
+#   - {CUSTOM_VAR: "value"}  # Uses "value" directly
+env:
+
+# Secrets to inject. Same input format as `env` but for sensitive data.
+secrets:
+  # - HF_TOKEN
+  # - WANDB_API_KEY
 ```

docs/config.qmd

@@ -354,7 +354,27 @@ lora_target_modules:
 #  - down_proj
 #  - up_proj
 lora_target_linear: # If true, will target all linear modules
-peft_layers_to_transform: # The layer indices to transform, otherwise, apply to all layers
+
+# List[int] | int. # The layer indices to transform, otherwise, apply to all layers
+# https://huggingface.co/docs/peft/v0.15.0/en/package_reference/lora#peft.LoraConfig.layers_to_transform
+peft_layers_to_transform:
+
+# Optional[bool]. Whether to use DoRA.
+# https://huggingface.co/docs/peft/v0.15.0/en/developer_guides/lora#weight-decomposed-low-rank-adaptation-dora
+peft_use_dora:
+
+# Optional[bool]. Whether to use RSLoRA.
+# https://huggingface.co/docs/peft/v0.15.0/en/developer_guides/lora#rank-stabilized-lora
+peft_use_rslora:
+
+# Optional[list[tuple[int, int]]]. List of layer indices to replicate.
+# https://huggingface.co/docs/peft/v0.15.0/en/developer_guides/lora#memory-efficient-layer-replication-with-lora
+peft_layer_replication:
+
+# bool | Literal["gaussian", "eva", "olora", "pissa", "pissa_niter_[number of iters]", "corda", "loftq"]
+# How to initialize LoRA weights. Default to True which is MS original implementation.
+# https://huggingface.co/docs/peft/v0.15.0/en/developer_guides/lora#initialization
+peft_init_lora_weights:
 
 # If you added new tokens to the tokenizer, you may need to save some LoRA modules because they need to know the new tokens.
 # For LLaMA and Mistral, you need to save `embed_tokens` and `lm_head`. It may vary for other models.