Add optional Axolotl MoRA/ReMoRA integration (#3647) [skip ci]

* Add optional Axolotl MoRA/ReMoRA integration

Co-authored-by: Axolotl Swarm <no-reply@axolotl.ai>

* Isolate MoRA adapter behavior in plugin

Co-authored-by: Axolotl Swarm <no-reply@axolotl.ai>

* Constrain MoRA variants to supported enum values

* Keep MoRA validation out of core config

---------

Co-authored-by: Swarm <swarm@localhost>
Co-authored-by: Axolotl Swarm <no-reply@axolotl.ai>

.axolotl-complete.bash

@@ -0,0 +1,41 @@
+#!/bin/bash
+
+_axolotl_completions() {
+    local cur prev
+    COMPREPLY=()
+    cur="${COMP_WORDS[COMP_CWORD]}"
+    prev="${COMP_WORDS[COMP_CWORD-1]}"
+
+    # If we're completing the first argument (the command)
+    if [[ $COMP_CWORD -eq 1 ]]; then
+        mapfile -t COMPREPLY < <(compgen -W "delinearize-llama4 fetch lm-eval merge-sharded-fsdp-weights quantize vllm-serve evaluate inference merge-lora preprocess train" -- "$cur")
+        return 0
+    fi
+
+    # Commands that should complete with directories and YAML files
+    local -a yaml_commands=("merge-sharded-fsdp-weights" "quantize" "vllm-serve" "evaluate" "inference" "merge-lora" "preprocess" "train")
+
+    # Check if previous word is in our list
+    if [[ " ${yaml_commands[*]} " =~ (^|[[:space:]])$prev($|[[:space:]]) ]]; then
+        # Use filename completion which handles directories properly
+        compopt -o filenames
+        mapfile -t COMPREPLY < <(compgen -f -- "$cur")
+
+        # Filter to only include directories and YAML files
+        local -a filtered=()
+        for item in "${COMPREPLY[@]}"; do
+            if [[ -d "$item" ]] || [[ "$item" == *.yaml ]] || [[ "$item" == *.yml ]]; then
+                filtered+=("$item")
+            fi
+        done
+        COMPREPLY=("${filtered[@]}")
+
+        return 0
+    fi
+
+    # Default: no completion
+    return 0
+}
+
+# Remove the -o nospace option - let filenames handle it
+complete -F _axolotl_completions axolotl

.bandit

@@ -1,3 +1,3 @@
 [bandit]
 exclude = tests
-skips = B101
+skips = B101,B615,B102,B110

.coderabbit.yaml

@@ -0,0 +1,17 @@
+# yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json
+language: "en-US"
+early_access: false
+reviews:
+  profile: "chill"
+  request_changes_workflow: false
+  high_level_summary: true
+  review_status: true
+  collapse_walkthrough: true
+  poem: false
+  sequence_diagrams: false
+  auto_review:
+    enabled: true
+    drafts: false
+    auto_incremental_review: false
+chat:
+  auto_reply: true

.coveragerc

@@ -0,0 +1,14 @@
+[run]
+source = axolotl
+omit =
+    */tests/*
+    setup.py
+
+[report]
+exclude_lines =
+    pragma: no cover
+    def __repr__
+    raise NotImplementedError
+    if __name__ == .__main__.:
+    pass
+    raise ImportError

.flake8

@@ -1,5 +0,0 @@
-[flake8]
-max-line-length = 88
-
-select = C,E,F,W,B,B950
-extend-ignore = E203, E501, W503

.github/CONTRIBUTING.md

@@ -31,7 +31,11 @@ PRs are **greatly welcome**!
 
 Please run below to setup env
 ```bash
-pip3 install -r requirements-dev.txt -r requirements-tests.txt
+# Install axolotl + dev and test dependencies
+export UV_TORCH_BACKEND=cu128  # or cu130
+uv venv --no-project --relocatable
+source .venv/bin/activate
+uv pip install --no-build-isolation -e '.[deepspeed]' --group dev --group test
 pre-commit install
 
 # test
@@ -57,11 +61,23 @@ We welcome ideas for improvements and new features. To suggest an enhancement, o
 5. Push your branch to your fork on GitHub.
 6. Open a new pull request against the `main` branch of the axolotl repository. Include a clear and concise description of your changes, referencing any related issues.
 
+#### Skipping CI Checks
+
+You can skip certain CI checks by including specific keywords in your commit messages:
+
+- `[skip ci]` or `skip ci` - Skips all CI checks for that commit
+- `[skip-e2e]` or `skip-e2e` - Skips only end-to-end tests while running other CI checks. You may also include this in the title of your PR to disable end-to-end tests for the entire PR.
+
 ## Style Guidelines
 
 ### Code Style
 
-axolotl uses [{codestyle}]({URLofCodestyle}) as its code style guide. Please ensure that your code follows these guidelines.
+axolotl uses [Ruff](https://docs.astral.sh/ruff/) as its code style guide. Please ensure that your code follows these guidelines.
+
+Use the pre-commit linter to ensure that your code is formatted consistently.
+```bash
+pre-commit run --all-files
+```
 
 ### Commit Messages
 
@@ -71,6 +87,6 @@ Write clear and concise commit messages that briefly describe the changes made i
 
 - [GitHub Help](https://help.github.com/)
 - [GitHub Pull Request Documentation](https://docs.github.com/en/github/collaborating-with-issues-and-pull-requests)
-- [{codestyle}]({URLofCodestyle})
+- [Ruff](https://docs.astral.sh/ruff/)
 
 Thank you once again for your interest in contributing to axolotl. We look forward to collaborating with you and creating an even better project together!

.github/FUNDING.yml

@@ -1,13 +1,13 @@
 # These are supported funding model platforms
 
-github: [winglian, OpenAccess-AI-Collective] # Replace with up to 4 GitHub Sponsors-enabled usernames e.g., [user1, user2]
+github: # Replace with up to 4 GitHub Sponsors-enabled usernames e.g., [user1, user2]
 patreon: # Replace with a single Patreon username
 open_collective: # Replace with a single Open Collective username
-ko_fi: axolotl_ai # Replace with a single Ko-fi username
+ko_fi: # Replace with a single Ko-fi username
 tidelift: # Replace with a single Tidelift platform-name/package-name e.g., npm/babel
 community_bridge: # Replace with a single Community Bridge project-name e.g., cloud-foundry
 liberapay: # Replace with a single Liberapay username
 issuehunt: # Replace with a single IssueHunt username
 otechie: # Replace with a single Otechie username
 lfx_crowdfunding: # Replace with a single LFX Crowdfunding project-name e.g., cloud-foundry
-custom: ['https://quickchart.io/qr?text=bitcoin%3Abc1qxlgwlqwfea5s2cxm42xqsfmwjct0rj8w8ea5np&size=480&centerImageUrl=https%3A%2F%2Fupload.wikimedia.org%2Fwikipedia%2Fcommons%2Fthumb%2F4%2F46%2FBitcoin.svg%2F64px-Bitcoin.svg.png'] # Replace with up to 4 custom sponsorship URLs e.g., ['link1', 'link2']
+custom: # Replace with up to 4 custom sponsorship URLs e.g., ['link1', 'link2']

.github/PULL_REQUEST_TEMPLATE.md

@@ -15,6 +15,11 @@
 <!--- Include details of your testing environment, tests ran to see how -->
 <!--- your change affects other areas of the code, etc. -->
 
+## AI Usage Disclaimer
+
+<!--- Was AI (e.g., ChatGPT, Claude, Copilot) used to generate or assist with this PR? -->
+<!--- Please indicate: No / Yes (specify which tool and to what extent) -->
+
 ## Screenshots (if appropriate)
 
 ## Types of changes

.github/workflows/base.yml

@@ -5,41 +5,102 @@ on:
     branches:
       - "main"
     paths:
-      - 'Dockerfile-base'
+      - 'docker/Dockerfile-base'
+      - 'docker/Dockerfile-uv-base'
       - '.github/workflows/base.yml'
   pull_request:
     paths:
-      - 'Dockerfile-base'
+      - 'docker/Dockerfile-base'
+      - 'docker/Dockerfile-uv-base'
       - '.github/workflows/base.yml'
   workflow_dispatch:
 
+permissions:
+  contents: read
+
 jobs:
   build-base:
-    if: github.repository_owner == 'axolotl-ai-cloud'
+    if: ${{ github.repository_owner == 'axolotl-ai-cloud' && (github.event_name != 'pull_request' || !github.event.pull_request.draft) }}
+    timeout-minutes: 480
     # this job needs to be run on self-hosted GPU runners...
-    runs-on: axolotl-gpu-runner
+    runs-on: ubuntu-latest-m
+    env:
+      HAS_DOCKERHUB_CREDS: ${{ secrets.DOCKERHUB_USERNAME != '' && secrets.DOCKERHUB_TOKEN != '' }}
     strategy:
       fail-fast: false
       matrix:
         include:
-          - cuda: "124"
-            cuda_version: 12.4.1
+          - cuda: "128"
+            cuda_version: 12.8.1
             cudnn_version: ""
             python_version: "3.11"
-            pytorch: 2.4.1
+            pytorch: 2.9.1
             torch_cuda_arch_list: "7.0 7.5 8.0 8.6 8.7 8.9 9.0+PTX"
-          - cuda: "124"
-            cuda_version: 12.4.1
+            dockerfile: "Dockerfile-base"
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: "128"
+            cuda_version: 12.8.1
             cudnn_version: ""
             python_version: "3.11"
-            pytorch: 2.5.1
+            pytorch: 2.10.0
             torch_cuda_arch_list: "7.0 7.5 8.0 8.6 8.7 8.9 9.0+PTX"
-          - cuda: "124"
-            cuda_version: 12.4.1
+            dockerfile: "Dockerfile-base"
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: "128"
+            cuda_version: 12.8.1
+            cudnn_version: ""
+            python_version: "3.12"
+            pytorch: 2.10.0
+            torch_cuda_arch_list: "7.0 7.5 8.0 8.6 8.7 8.9 9.0+PTX"
+            dockerfile: "Dockerfile-base"
+            platforms: "linux/amd64,linux/arm64"
+#          - cuda: "129"
+#            cuda_version: 12.9.1
+#            cudnn_version: ""
+#            python_version: "3.12"
+#            pytorch: 2.9.1
+#            torch_cuda_arch_list: "7.0 7.5 8.0 8.6 8.7 8.9 9.0+PTX"
+#            dockerfile: "Dockerfile-base"
+#            platforms: "linux/amd64,linux/arm64"
+          - cuda: "130"
+            cuda_version: 13.0.0
             cudnn_version: ""
             python_version: "3.11"
-            pytorch: 2.6.0
-            torch_cuda_arch_list: "7.0 7.5 8.0 8.6 8.7 8.9 9.0+PTX"
+            pytorch: 2.9.1
+            torch_cuda_arch_list: "9.0+PTX"
+            dockerfile: "Dockerfile-base"
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: "130"
+            cuda_version: 13.0.0
+            cudnn_version: ""
+            python_version: "3.12"
+            pytorch: 2.9.1
+            torch_cuda_arch_list: "9.0+PTX"
+            dockerfile: "Dockerfile-base"
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: "130"
+            cuda_version: 13.0.0
+            cudnn_version: ""
+            python_version: "3.12"
+            pytorch: 2.10.0
+            torch_cuda_arch_list: "9.0+PTX"
+            dockerfile: "Dockerfile-base"
+            platforms: "linux/amd64,linux/arm64"
+#          - cuda: "128"
+#            cuda_version: 12.8.1
+#            cudnn_version: ""
+#            python_version: "3.11"
+#            pytorch: nightly
+#            torch_cuda_arch_list: "7.0 7.5 8.0 8.6 8.7 8.9 9.0+PTX"
+#            dockerfile: "Dockerfile-base-nightly"
+#          # "next" is for release candidates of pytorch
+#          - cuda: "128"
+#            cuda_version: 12.8.1
+#            cudnn_version: ""
+#            python_version: "3.11"
+#            pytorch: next
+#            torch_cuda_arch_list: "7.0 7.5 8.0 8.6 8.7 8.9 9.0+PTX"
+#            dockerfile: "Dockerfile-base-next"
     steps:
       - name: Checkout
         uses: actions/checkout@v4
@@ -48,20 +109,128 @@ jobs:
         uses: docker/metadata-action@v5
         with:
           images: |
-            winglian/axolotl-base
             axolotlai/axolotl-base
       - name: Login to Docker Hub
-        uses: docker/login-action@v2
+        uses: docker/login-action@v3
+        if: ${{ github.event_name != 'pull_request' && env.HAS_DOCKERHUB_CREDS == 'true' }}
         with:
           username: ${{ secrets.DOCKERHUB_USERNAME }}
           password: ${{ secrets.DOCKERHUB_TOKEN }}
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@v3
       - name: Build
-        uses: docker/build-push-action@v4
+        uses: docker/build-push-action@v5
         with:
           context: .
-          file: ./docker/Dockerfile-base
+          file: ./docker/${{ matrix.dockerfile }}
+          platforms: ${{ matrix.platforms }}
+          push: ${{ github.event_name != 'pull_request' }}
+          tags: ${{ steps.metadata.outputs.tags }}-base-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}${{ matrix.axolotl_extras != '' && '-' || '' }}${{ matrix.axolotl_extras }}
+          labels: ${{ steps.metadata.outputs.labels }}
+          build-args: |
+            CUDA_VERSION=${{ matrix.cuda_version }}
+            CUDNN_VERSION=${{ matrix.cudnn_version }}
+            CUDA=${{ matrix.cuda }}
+            PYTHON_VERSION=${{ matrix.python_version }}
+            PYTORCH_VERSION=${{ matrix.pytorch }}
+            TORCH_CUDA_ARCH_LIST=${{ matrix.torch_cuda_arch_list }}
+  build-base-uv:
+    if: ${{ github.repository_owner == 'axolotl-ai-cloud' && (github.event_name != 'pull_request' || !github.event.pull_request.draft) }}
+    timeout-minutes: 480
+    runs-on: ubuntu-latest-m
+    env:
+      HAS_DOCKERHUB_CREDS: ${{ secrets.DOCKERHUB_USERNAME != '' && secrets.DOCKERHUB_TOKEN != '' }}
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - cuda: "128"
+            cuda_version: 12.8.1
+            cudnn_version: ""
+            python_version: "3.11"
+            pytorch: 2.9.1
+            torch_cuda_arch_list: "7.0 7.5 8.0 8.6 8.7 8.9 9.0+PTX"
+            dockerfile: "Dockerfile-uv-base"
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: "128"
+            cuda_version: 12.8.1
+            cudnn_version: ""
+            python_version: "3.12"
+            pytorch: 2.9.1
+            torch_cuda_arch_list: "7.0 7.5 8.0 8.6 8.7 8.9 9.0+PTX"
+            dockerfile: "Dockerfile-uv-base"
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: "128"
+            cuda_version: 12.8.1
+            cudnn_version: ""
+            python_version: "3.11"
+            pytorch: 2.10.0
+            torch_cuda_arch_list: "7.0 7.5 8.0 8.6 8.7 8.9 9.0+PTX"
+            dockerfile: "Dockerfile-uv-base"
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: "128"
+            cuda_version: 12.8.1
+            cudnn_version: ""
+            python_version: "3.12"
+            pytorch: 2.10.0
+            torch_cuda_arch_list: "7.0 7.5 8.0 8.6 8.7 8.9 9.0+PTX"
+            dockerfile: "Dockerfile-uv-base"
+            platforms: "linux/amd64,linux/arm64"
+#          - cuda: "129"
+#            cuda_version: 12.9.1
+#            cudnn_version: ""
+#            python_version: "3.12"
+#            pytorch: 2.9.1
+#            torch_cuda_arch_list: "7.0 7.5 8.0 8.6 8.7 8.9 9.0+PTX"
+#            dockerfile: "Dockerfile-uv-base"
+#            platforms: "linux/amd64,linux/arm64"
+          - cuda: "130"
+            cuda_version: 13.0.0
+            cudnn_version: ""
+            python_version: "3.11"
+            pytorch: 2.9.1
+            torch_cuda_arch_list: "9.0+PTX"
+            dockerfile: "Dockerfile-uv-base"
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: "130"
+            cuda_version: 13.0.0
+            cudnn_version: ""
+            python_version: "3.12"
+            pytorch: 2.9.1
+            torch_cuda_arch_list: "9.0+PTX"
+            dockerfile: "Dockerfile-uv-base"
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: "130"
+            cuda_version: 13.0.0
+            cudnn_version: ""
+            python_version: "3.12"
+            pytorch: 2.10.0
+            torch_cuda_arch_list: "9.0+PTX"
+            dockerfile: "Dockerfile-uv-base"
+            platforms: "linux/amd64,linux/arm64"
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Docker metadata
+        id: metadata
+        uses: docker/metadata-action@v5
+        with:
+          images: |
+            axolotlai/axolotl-base-uv
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        if: ${{ github.event_name != 'pull_request' && env.HAS_DOCKERHUB_CREDS == 'true' }}
+        with:
+          username: ${{ secrets.DOCKERHUB_USERNAME }}
+          password: ${{ secrets.DOCKERHUB_TOKEN }}
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+      - name: Build
+        uses: docker/build-push-action@v5
+        with:
+          context: .
+          file: ./docker/${{ matrix.dockerfile }}
+          platforms: ${{ matrix.platforms }}
           push: ${{ github.event_name != 'pull_request' }}
           tags: ${{ steps.metadata.outputs.tags }}-base-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}${{ matrix.axolotl_extras != '' && '-' || '' }}${{ matrix.axolotl_extras }}
           labels: ${{ steps.metadata.outputs.labels }}

.github/workflows/docs.yml

@@ -12,6 +12,9 @@ jobs:
     build-deploy:
         runs-on: ubuntu-latest
         steps:
+        - name: cleanup node
+          run: |
+            sudo rm -rf /usr/share/dotnet /usr/local/lib/android /opt/ghc /opt/hostedtoolcache/CodeQL
         - name: Check out repository
           uses: actions/checkout@v4
         - name: Set up Quarto
@@ -20,9 +23,12 @@ jobs:
           uses: actions/setup-python@v5
           with:
             python-version: '3.11'
-        - name: install dependencies
+        - name: Install dependencies
           run: |
-            python3 -m pip install jupyter
+            python3 -m pip install jupyter quartodoc
+            python3 -m pip install -e .
+        - name: Build autodoc
+          run: quartodoc build
         - name: Publish to GitHub Pages (and render)
           uses: quarto-dev/quarto-actions/publish@v2
           with:

.github/workflows/lint.yml

@@ -3,18 +3,24 @@ on:
   # check on PRs, and manual triggers
   merge_group:
   pull_request:
+      types: [opened, synchronize, reopened, ready_for_review]
       paths:
        - '**.py'
-       - 'requirements.txt'
+       - 'pyproject.toml'
        - '.github/workflows/*.yml'
        - "*.[q]md"
        - "examples/**/*.y[a]?ml"
+       - ".pre-commit-config.yaml"
   workflow_dispatch:
 
+permissions:
+  contents: read
+
 jobs:
   pre-commit:
     name: pre-commit
     runs-on: ubuntu-latest
+    if: ${{ !github.event.pull_request.draft }}
     steps:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v5

.github/workflows/main.yml

@@ -8,6 +8,9 @@ on:
       - "v*"
   workflow_dispatch:
 
+permissions:
+  contents: read
+
 jobs:
   build-axolotl:
     if: ${{ ! contains(github.event.commits[0].message, '[skip docker]') && github.repository_owner == 'axolotl-ai-cloud' }}
@@ -15,22 +18,37 @@ jobs:
       fail-fast: false
       matrix:
         include:
-          - cuda: 124
-            cuda_version: 12.4.1
+          - cuda: 128
+            cuda_version: 12.8.1
             python_version: "3.11"
-            pytorch: 2.4.1
+            pytorch: 2.9.1
             axolotl_extras:
-          - cuda: 124
-            cuda_version: 12.4.1
-            python_version: "3.11"
-            pytorch: 2.5.1
-            axolotl_extras: vllm
+            platforms: "linux/amd64,linux/arm64"
             is_latest: true
-          - cuda: 124
-            cuda_version: 12.4.1
-            python_version: "3.11"
-            pytorch: 2.6.0
+          - cuda: 128
+            cuda_version: 12.8.1
+            python_version: "3.12"
+            pytorch: 2.10.0
             axolotl_extras:
+            platforms: "linux/amd64,linux/arm64"
+#          - cuda: 129
+#            cuda_version: 12.9.1
+#            python_version: "3.12"
+#            pytorch: 2.9.1
+#            axolotl_extras:
+#            platforms: "linux/amd64,linux/arm64"
+          - cuda: 130
+            cuda_version: 13.0.0
+            python_version: "3.11"
+            pytorch: 2.9.1
+            axolotl_extras:
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: 130
+            cuda_version: 13.0.0
+            python_version: "3.12"
+            pytorch: 2.10.0
+            axolotl_extras:
+            platforms: "linux/amd64,linux/arm64"
     runs-on: axolotl-gpu-runner
     steps:
       - name: Checkout
@@ -40,7 +58,6 @@ jobs:
         uses: docker/metadata-action@v5
         with:
           images: |
-            winglian/axolotl
             axolotlai/axolotl
           tags: |
             type=ref,event=branch
@@ -57,11 +74,13 @@ jobs:
         uses: docker/build-push-action@v5
         with:
           context: .
+          platforms: ${{ matrix.platforms }}
           build-args: |
             BASE_TAG=${{ github.ref_type == 'tag' && 'main' || github.ref_name }}-base-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}
             CUDA=${{ matrix.cuda }}
             PYTORCH_VERSION=${{ matrix.pytorch }}
             AXOLOTL_ARGS=${{ matrix.axolotl_args }}
+            AXOLOTL_EXTRAS=${{ matrix.axolotl_extras}}
           file: ./docker/Dockerfile
           push: ${{ github.event_name != 'pull_request' }}
           tags: |
@@ -70,29 +89,122 @@ jobs:
             ${{ (matrix.is_latest) && format('{0}-latest', steps.metadata.outputs.tags) || '' }}
           labels: ${{ steps.metadata.outputs.labels }}
 
+  build-axolotl-uv:
+    if: ${{ ! contains(github.event.commits[0].message, '[skip docker]') && github.repository_owner == 'axolotl-ai-cloud' }}
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - cuda: 128
+            cuda_version: 12.8.1
+            python_version: "3.11"
+            pytorch: 2.9.1
+            axolotl_extras:
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: 128
+            cuda_version: 12.8.1
+            python_version: "3.12"
+            pytorch: 2.9.1
+            axolotl_extras:
+            platforms: "linux/amd64,linux/arm64"
+            is_latest: true
+          - cuda: 128
+            cuda_version: 12.8.1
+            python_version: "3.12"
+            pytorch: 2.10.0
+            axolotl_extras:
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: 130
+            cuda_version: 13.0.0
+            python_version: "3.11"
+            pytorch: 2.9.1
+            axolotl_extras:
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: 130
+            cuda_version: 13.0.0
+            python_version: "3.12"
+            pytorch: 2.10.0
+            axolotl_extras:
+            platforms: "linux/amd64,linux/arm64"
+    runs-on: axolotl-gpu-runner
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Docker metadata
+        id: metadata
+        uses: docker/metadata-action@v5
+        with:
+          images: |
+            axolotlai/axolotl-uv
+          tags: |
+            type=ref,event=branch
+            type=pep440,pattern={{version}}
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKERHUB_USERNAME }}
+          password: ${{ secrets.DOCKERHUB_TOKEN }}
+      # guidance for testing before pushing: https://docs.docker.com/build/ci/github-actions/test-before-push/
+      - name: Build and export to Docker
+        uses: docker/build-push-action@v5
+        with:
+          context: .
+          platforms: ${{ matrix.platforms }}
+          build-args: |
+            BASE_TAG=${{ github.ref_type == 'tag' && 'main' || github.ref_name }}-base-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}
+            CUDA=${{ matrix.cuda }}
+            PYTORCH_VERSION=${{ matrix.pytorch }}
+            AXOLOTL_ARGS=${{ matrix.axolotl_args }}
+            AXOLOTL_EXTRAS=${{ matrix.axolotl_extras}}
+          file: ./docker/Dockerfile-uv
+          push: ${{ github.event_name != 'pull_request' }}
+          tags: |
+            ${{ steps.metadata.outputs.tags }}-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}${{ matrix.axolotl_extras != '' && '-' || '' }}${{ matrix.axolotl_extras }}
+            ${{ steps.metadata.outputs.tags }}-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}
+            ${{ (matrix.is_latest) && format('{0}-latest', steps.metadata.outputs.tags) || '' }}
+          labels: ${{ steps.metadata.outputs.labels }}
+
   build-axolotl-cloud:
     needs: build-axolotl
     if: ${{ ! contains(github.event.commits[0].message, '[skip docker]') && github.repository_owner == 'axolotl-ai-cloud' }}
     # this job needs to be run on self-hosted GPU runners...
     strategy:
+      fail-fast: false
       matrix:
         include:
-          - cuda: 124
-            cuda_version: 12.4.1
+          - cuda: 128
+            cuda_version: 12.8.1
             python_version: "3.11"
-            pytorch: 2.4.1
-            axolotl_extras:
-          - cuda: 124
-            cuda_version: 12.4.1
-            python_version: "3.11"
-            pytorch: 2.5.1
+            pytorch: 2.9.1
             axolotl_extras:
             is_latest: true
-          - cuda: 124
-            cuda_version: 12.4.1
-            python_version: "3.11"
-            pytorch: 2.6.0
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: 128
+            cuda_version: 12.8.1
+            python_version: "3.12"
+            pytorch: 2.10.0
             axolotl_extras:
+            platforms: "linux/amd64,linux/arm64"
+#          - cuda: 129
+#            cuda_version: 12.9.1
+#            python_version: "3.12"
+#            pytorch: 2.9.1
+#            axolotl_extras:
+#            platforms: "linux/amd64,linux/arm64"
+          - cuda: 130
+            cuda_version: 13.0.0
+            python_version: "3.11"
+            pytorch: 2.9.1
+            axolotl_extras:
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: 130
+            cuda_version: 13.0.0
+            python_version: "3.12"
+            pytorch: 2.10.0
+            axolotl_extras:
+            platforms: "linux/amd64,linux/arm64"
     runs-on: axolotl-gpu-runner
     steps:
       - name: Checkout
@@ -102,7 +214,6 @@ jobs:
         uses: docker/metadata-action@v5
         with:
           images: |
-            winglian/axolotl-cloud
             axolotlai/axolotl-cloud
           tags: |
             type=ref,event=branch
@@ -118,6 +229,7 @@ jobs:
         uses: docker/build-push-action@v5
         with:
           context: .
+          platforms: ${{ matrix.platforms }}
           build-args: |
             BASE_TAG=${{ github.ref_type == 'tag' && 'main' || github.ref_name }}-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}${{ matrix.axolotl_extras != '' && '-' || '' }}${{ matrix.axolotl_extras }}
             CUDA=${{ matrix.cuda }}
@@ -128,18 +240,100 @@ jobs:
              ${{ (matrix.is_latest) && format('{0}-latest', steps.metadata.outputs.tags) || '' }}
           labels: ${{ steps.metadata.outputs.labels }}
 
+  build-axolotl-cloud-uv:
+    needs: build-axolotl-uv
+    if: ${{ ! contains(github.event.commits[0].message, '[skip docker]') && github.repository_owner == 'axolotl-ai-cloud' }}
+    # this job needs to be run on self-hosted GPU runners...
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - cuda: 128
+            cuda_version: 12.8.1
+            python_version: "3.11"
+            pytorch: 2.9.1
+            axolotl_extras:
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: 128
+            cuda_version: 12.8.1
+            python_version: "3.12"
+            pytorch: 2.9.1
+            axolotl_extras:
+            is_latest: true
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: 128
+            cuda_version: 12.8.1
+            python_version: "3.12"
+            pytorch: 2.10.0
+            axolotl_extras:
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: 130
+            cuda_version: 13.0.0
+            python_version: "3.11"
+            pytorch: 2.9.1
+            axolotl_extras:
+            platforms: "linux/amd64,linux/arm64"
+          - cuda: 130
+            cuda_version: 13.0.0
+            python_version: "3.12"
+            pytorch: 2.10.0
+            axolotl_extras:
+            platforms: "linux/amd64,linux/arm64"
+    runs-on: axolotl-gpu-runner
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Docker metadata
+        id: metadata
+        uses: docker/metadata-action@v5
+        with:
+          images: |
+            axolotlai/axolotl-cloud-uv
+          tags: |
+            type=ref,event=branch
+            type=pep440,pattern={{version}}
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKERHUB_USERNAME }}
+          password: ${{ secrets.DOCKERHUB_TOKEN }}
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+      - name: Build
+        uses: docker/build-push-action@v5
+        with:
+          context: .
+          platforms: ${{ matrix.platforms }}
+          build-args: |
+            BASE_TAG=${{ github.ref_type == 'tag' && 'main' || github.ref_name }}-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}${{ matrix.axolotl_extras != '' && '-' || '' }}${{ matrix.axolotl_extras }}
+            CUDA=${{ matrix.cuda }}
+          file: ./docker/Dockerfile-cloud-uv
+          push: ${{ github.event_name != 'pull_request' }}
+          tags: |
+             ${{ steps.metadata.outputs.tags }}-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}${{ matrix.axolotl_extras != '' && '-' || '' }}${{ matrix.axolotl_extras }}
+             ${{ (matrix.is_latest) && format('{0}-latest', steps.metadata.outputs.tags) || '' }}
+          labels: ${{ steps.metadata.outputs.labels }}
+
   build-axolotl-cloud-no-tmux:
     needs: build-axolotl
     if: ${{ ! contains(github.event.commits[0].message, '[skip docker]') && github.repository_owner == 'axolotl-ai-cloud' }}
     # this job needs to be run on self-hosted GPU runners...
     strategy:
+      fail-fast: false
       matrix:
         include:
-          - cuda: 124
-            cuda_version: 12.4.1
+          - cuda: 128
+            cuda_version: 12.8.1
             python_version: "3.11"
-            pytorch: 2.4.1
+            pytorch: 2.9.1
             axolotl_extras:
+            is_latest: true
+          - cuda: 130
+            cuda_version: 13.0.0
+            python_version: "3.11"
+            pytorch: 2.9.1
+            axolotl_extras:
+            is_latest:
     runs-on: axolotl-gpu-runner
     steps:
       - name: Checkout
@@ -149,7 +343,6 @@ jobs:
         uses: docker/metadata-action@v5
         with:
           images: |
-            winglian/axolotl-cloud-term
             axolotlai/axolotl-cloud-term
           tags: |
             type=ref,event=branch
@@ -165,6 +358,7 @@ jobs:
         uses: docker/build-push-action@v5
         with:
           context: .
+          platforms: linux/amd64,linux/arm64
           build-args: |
             BASE_TAG=${{ github.ref_type == 'tag' && 'main' || github.ref_name }}-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}${{ matrix.axolotl_extras != '' && '-' || '' }}${{ matrix.axolotl_extras }}
             CUDA=${{ matrix.cuda }}

.github/workflows/multi-gpu-e2e.yml

@@ -3,49 +3,54 @@ name: docker-multigpu-tests-biweekly
 on:
   pull_request:
     paths:
-      - 'tests/e2e/multigpu/*.py'
-      - 'requirements.txt'
-      - 'setup.py'
-      - 'pyproject.toml'
-      - '.github/workflows/multi-gpu-e2e.yml'
+      - "tests/e2e/multigpu/**.py"
+      - "pyproject.toml"
+      - ".github/workflows/multi-gpu-e2e.yml"
+      - "scripts/cutcrossentropy_install.py"
+      - "src/axolotl/core/trainers/mixins/sequence_parallel.py"
+      - "src/axolotl/utils/distributed.py"
   workflow_dispatch:
   schedule:
-    - cron: '0 0 * * 1,4'  # Runs at 00:00 UTC every monday & thursday
+    - cron: "0 0 * * 1,4" # Runs at 00:00 UTC every monday & thursday
 
 # Cancel jobs on the same ref if a new one is triggered
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: ${{ github.ref != 'refs/heads/main' }}
 
+permissions:
+  contents: read
+
+env:
+  MODAL_IMAGE_BUILDER_VERSION: "2025.06"
+
 jobs:
   test-axolotl-multigpu:
-    if: ${{ ! contains(github.event.commits[0].message, '[skip e2e]') && github.repository_owner == 'axolotl-ai-cloud' }}
+    if: ${{ ! contains(github.event.commits[0].message, '[skip e2e]') && github.repository_owner == 'axolotl-ai-cloud' && (github.event_name != 'pull_request' || !github.event.pull_request.draft) }}
     strategy:
       fail-fast: false
       matrix:
         include:
-          - cuda: 124
-            cuda_version: 12.4.1
+          #          - cuda: 129
+          #            cuda_version: 12.9.1
+          #            python_version: "3.12"
+          #            pytorch: 2.9.1
+          #            axolotl_extras: "fbgemm-gpu"
+          #            num_gpus: 2
+          #            dockerfile: "Dockerfile-uv.jinja"
+          - cuda: 130
+            cuda_version: 13.0.0
             python_version: "3.11"
-            pytorch: 2.4.1
-            axolotl_extras:  # no vllm support for 2.4.1
-            num_gpus: 2
-            nightly_build: "true"
-          - cuda: 124
-            cuda_version: 12.4.1
-            python_version: "3.11"
-            pytorch: 2.5.1
-            axolotl_extras: vllm
-            num_gpus: 2
-            nightly_build: "true"
-          - cuda: 124
-            cuda_version: 12.4.1
-            python_version: "3.11"
-            pytorch: 2.6.0
-            # awaiting vllm#12721
+            pytorch: 2.9.1
             axolotl_extras:
+            #            axolotl_extras: fbgemm-gpu
+            num_gpus: 2
+          - cuda: 128
+            cuda_version: 12.8.1
+            python_version: "3.11"
+            pytorch: 2.10.0
+            axolotl_extras: "fbgemm-gpu"
             num_gpus: 2
-            nightly_build: "true"
     runs-on: [self-hosted, modal]
     timeout-minutes: 120
     steps:
@@ -58,7 +63,7 @@ jobs:
       - name: Install Modal
         run: |
           python -m pip install --upgrade pip
-          pip install modal==0.71.8 jinja2
+          pip install modal==1.3.0.post1 jinja2
       - name: Update env vars
         run: |
           echo "BASE_TAG=main-base-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}" >> $GITHUB_ENV
@@ -67,7 +72,9 @@ jobs:
           echo "AXOLOTL_EXTRAS=${{ matrix.axolotl_extras}}" >> $GITHUB_ENV
           echo "CUDA=${{ matrix.cuda }}" >> $GITHUB_ENV
           echo "N_GPUS=${{ matrix.num_gpus }}" >> $GITHUB_ENV
-          echo "NIGHTLY_BUILD=${{ matrix.nightly_build }}" >> $GITHUB_ENV
+          echo "E2E_DOCKERFILE=${{ matrix.dockerfile || 'Dockerfile-uv.jinja'}}" >> $GITHUB_ENV
       - name: Run tests job on Modal
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
         run: |
-          modal run cicd.multigpu
+          modal run -m cicd.multigpu

.github/workflows/nightlies.yml

@@ -5,6 +5,9 @@ on:
   schedule:
     - cron: '0 0 * * *'  # Runs at 00:00 UTC every day
 
+permissions:
+  contents: read
+
 jobs:
   build-axolotl:
     if: ${{ ! contains(github.event.commits[0].message, '[skip docker]') && github.repository_owner == 'axolotl-ai-cloud' }}
@@ -12,20 +15,10 @@ jobs:
       fail-fast: false
       matrix:
         include:
-          - cuda: 124
-            cuda_version: 12.4.1
+          - cuda: 128
+            cuda_version: 12.8.1
             python_version: "3.11"
-            pytorch: 2.4.1
-            axolotl_extras:
-          - cuda: 124
-            cuda_version: 12.4.1
-            python_version: "3.11"
-            pytorch: 2.5.1
-            axolotl_extras:
-          - cuda: 124
-            cuda_version: 12.4.1
-            python_version: "3.11"
-            pytorch: 2.6.0
+            pytorch: 2.9.1
             axolotl_extras:
     runs-on: axolotl-gpu-runner
     steps:
@@ -36,7 +29,6 @@ jobs:
         uses: docker/metadata-action@v5
         with:
           images: |
-            winglian/axolotl
             axolotlai/axolotl
           tags: |
             type=raw,value={{ branch }}-{{ date 'YYYYMMDD' }}
@@ -70,20 +62,10 @@ jobs:
     strategy:
       matrix:
         include:
-          - cuda: 124
-            cuda_version: 12.4.1
+          - cuda: 128
+            cuda_version: 12.8.1
             python_version: "3.11"
-            pytorch: 2.4.1
-            axolotl_extras:
-          - cuda: 124
-            cuda_version: 12.4.1
-            python_version: "3.11"
-            pytorch: 2.5.1
-            axolotl_extras:
-          - cuda: 124
-            cuda_version: 12.4.1
-            python_version: "3.11"
-            pytorch: 2.6.0
+            pytorch: 2.9.1
             axolotl_extras:
     runs-on: axolotl-gpu-runner
     steps:
@@ -94,7 +76,6 @@ jobs:
         uses: docker/metadata-action@v5
         with:
           images: |
-            winglian/axolotl-cloud
             axolotlai/axolotl-cloud
           tags: |
             type=raw,value={{ branch }}-{{ date 'YYYYMMDD' }}

.github/workflows/precommit-autoupdate.yml

@@ -0,0 +1,42 @@
+name: Pre-commit auto-update
+
+on:
+  schedule:
+    - cron: '0 0 1 * *'  # Run monthly
+  workflow_dispatch:  # Manual kickoff
+
+permissions: {}
+
+jobs:
+  auto-update:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+      pull-requests: write
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+
+      - name: Update pre-commit hooks
+        id: update
+        run: |
+          pip install pre-commit
+          pre-commit autoupdate
+          if [[ -n $(git status --porcelain) ]]; then
+            echo "changes=true" >> $GITHUB_OUTPUT
+          fi
+
+      - name: Create Pull Request
+        if: steps.update.outputs.changes == 'true'
+        uses: peter-evans/create-pull-request@v6
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          branch: update/pre-commit-hooks
+          delete-branch: true
+          title: "chore: update pre-commit hooks"
+          commit-message: "chore: update pre-commit hooks"
+          body: |
+            Automated PR to update pre-commit hooks to their latest versions.

.github/workflows/preview-docs.yml

@@ -0,0 +1,77 @@
+name: Preview
+on:
+  workflow_dispatch:
+  pull_request:
+    types: [opened, synchronize, reopened, ready_for_review]
+
+    # Run the workflow only when one of these files changes
+    paths:
+      - '**/*.md'      # any Markdown file
+      - '**/*.qmd'     # any Quarto file
+      - '_quarto.yml'
+      - docs/scripts/generate_config_docs.py
+      - src/axolotl/utils/schemas/**.py
+      - .github/workflows/preview-docs.yml
+
+permissions:
+  contents: read
+  pull-requests: write
+
+jobs:
+  preview:
+    runs-on: ubuntu-latest
+    if: ${{ !github.event.pull_request.draft }}
+    steps:
+      - name: cleanup node
+        run: |
+          sudo rm -rf /usr/share/dotnet /usr/local/lib/android /opt/ghc /opt/hostedtoolcache/CodeQL
+
+      - name: Check out repository
+        uses: actions/checkout@v4
+        with:
+          ref: ${{ github.event.pull_request.head.sha }}
+
+      - name: Set up Quarto
+        uses: quarto-dev/quarto-actions/setup@v2
+
+      - name: Setup Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+
+      - name: Install dependencies
+        run: |
+          python3 -m pip install jupyter quartodoc
+          python3 -m pip install -e .
+
+      - name: Build autodoc
+        run: quartodoc build
+
+      - name: Quarto render
+        run: quarto render
+
+      - name: Netlify Publish
+        uses: nwtgck/actions-netlify@v3.0
+        if: ${{ github.event.pull_request.head.repo.full_name == github.repository }}
+        id: netlify
+        with:
+          publish-dir: './_site'
+          enable-pull-request-comment: false
+          enable-github-deployment: false
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+          deploy-message: "Deployed On Netlify"
+          github-deployment-environment: 'preview'
+          github-deployment-description: 'Preview Deployment'
+        env:
+          NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
+          NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
+
+      - name: Update PR with preview link
+        if: ${{ steps.netlify.outcome == 'success' }}
+        uses: marocchino/sticky-pull-request-comment@v2
+        with:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          message: |
+            📖 **Documentation Preview**: ${{ steps.netlify.outputs.deploy-url }}
+
+            Deployed on Netlify from commit ${{ github.event.pull_request.head.sha }}

.github/workflows/pypi.yml

@@ -3,9 +3,14 @@ name: publish pypi
 on:
   push:
     tags:
-      - 'v*'
+      - "v*"
   workflow_dispatch:
 
+permissions: {}
+
+env:
+  UV_SYSTEM_PYTHON: "1"
+
 jobs:
   setup_release:
     name: Create Release
@@ -28,7 +33,8 @@ jobs:
       name: pypi
       url: https://pypi.org/p/axolotl
     permissions:
-      id-token: write  # IMPORTANT: this permission is mandatory for trusted publishing
+      contents: read
+      id-token: write # IMPORTANT: this permission is mandatory for trusted publishing
     steps:
       - name: Check out repository code
         uses: actions/checkout@v4
@@ -38,19 +44,23 @@ jobs:
         with:
           python-version: "3.11"
 
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
+
       - name: Install dependencies
         run: |
-          pip3 install wheel packaging
-          pip3 install --no-build-isolation -e .
-          pip3 install -r requirements-dev.txt -r requirements-tests.txt
+          uv pip install wheel packaging
+          uv pip install --no-build-isolation -e .
+          uv pip install black mypy pre-commit types-requests quartodoc jupyter blobfile tiktoken \
+            codecov codecov-cli pytest pytest-cov pytest-retry pytest-sugar pytest-xdist tbparse
 
       - name: Extract tag name
         id: tag
-        run: echo ::set-output name=TAG_NAME::$(echo $GITHUB_REF | cut -d / -f 3)
+        run: echo "TAG_NAME=$(echo $GITHUB_REF | cut -d / -f 3)" >> "$GITHUB_OUTPUT"
 
-      - name: Update version in setup.py
+      - name: Update version in VERSION file
         run: |
-          sed -i -E 's/version="([0-9.]+)",/version="${{ steps.tag.outputs.TAG_NAME }}",/g' setup.py
+          echo "${{ steps.tag.outputs.TAG_NAME }}" | sed 's/^v//' > VERSION
 
       - name: Build a source dist
         run: |

.github/workflows/tests-nightly.yml

@@ -2,7 +2,17 @@ name: Tests Nightly against upstream main
 on:
   workflow_dispatch:
   schedule:
-    - cron: '0 0 * * *'  # Runs at 00:00 UTC every day
+    - cron: "0 0 * * *" # Runs at 00:00 UTC every day
+  pull_request:
+    types: [opened, synchronize, reopened, ready_for_review]
+    paths:
+      - ".github/workflows/tests-nightly.yml"
+
+permissions:
+  contents: read
+
+env:
+  UV_SYSTEM_PYTHON: "1"
 
 jobs:
   pre-commit:
@@ -13,61 +23,75 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: "3.11"
-          cache: 'pip' # caching pip dependencies
+          cache: "pip" # caching pip dependencies
       - uses: pre-commit/action@v3.0.1
         env:
           SKIP: no-commit-to-branch
 
+  prime-cdn-s3-cache:
+    name: Prefetch S3 once to prime the CDN cache
+    runs-on: ubuntu-latest
+    if: ${{ !github.event.pull_request.draft }}
+    timeout-minutes: 10
+    steps:
+      - name: Restore Cache from S3
+        id: hf-cache-restore-s3
+        run: |
+          curl -v -H "Range: bytes=0-1023" -L https://axolotl-ci.b-cdn.net/hf-cache.tar.zst > /dev/null
+
   pytest:
     name: PyTest
     runs-on: ubuntu-latest
+    needs: [prime-cdn-s3-cache]
     strategy:
       fail-fast: false
-      max-parallel: 2
       matrix:
-        python_version: ["3.11"]
-        pytorch_version: ["2.4.1", "2.5.1", "2.6.0"]
+        python_version: ["3.12"] # TODO include py3.14 once https://github.com/mistralai/mistral-common/pull/194 is merged
+        pytorch_version: ["2.9.1", "2.10.0"]
     timeout-minutes: 20
 
     steps:
       - name: Check out repository code
         uses: actions/checkout@v4
 
+      - name: Restore Cache from S3
+        id: hf-cache-restore-s3
+        run: |
+          mkdir -p /home/runner/.cache/huggingface/hub
+          curl -L https://axolotl-ci.b-cdn.net/hf-cache.tar.zst | tar -xf - -C /home/runner/.cache/huggingface/hub/  --use-compress-program unzstd
+
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python_version }}
-          cache: 'pip' # caching pip dependencies
 
-      - name: upgrade pip
-        run: |
-          pip3 install --upgrade pip
-          pip3 install --upgrade packaging setuptools wheel
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
 
       - name: Install PyTorch
         run: |
-          pip3 install torch==${{ matrix.pytorch_version }} --index-url https://download.pytorch.org/whl/cpu
-
-      - name: Update requirements.txt
-        run: |
-          sed -i 's#^transformers.*#transformers @ git+https://github.com/huggingface/transformers.git@main#' requirements.txt
-          sed -i 's#^peft.*#peft @ git+https://github.com/huggingface/peft.git@main#' requirements.txt
-          sed -i 's#^accelerate.*#accelerate @ git+https://github.com/huggingface/accelerate.git@main#' requirements.txt
-          sed -i 's#^trl.*#trl @ git+https://github.com/huggingface/trl.git@main#' requirements.txt
-          sed -i 's#^datasets.*#datasets @ git+https://github.com/huggingface/datasets.git@main#' requirements.txt
+          uv pip install torch==${{ matrix.pytorch_version }} torchvision
+          uv pip freeze | grep -E "^(torch|torchvision)==" > /tmp/torch-pin.txt
 
       - name: Install dependencies
         run: |
-          pip3 install --upgrade pip
-          pip3 install --upgrade packaging
-          pip3 install --no-build-isolation -U -e .
-          python scripts/unsloth_install.py | sh
-          python scripts/cutcrossentropy_install.py | sh
-          pip3 install -r requirements-dev.txt -r requirements-tests.txt
+          uv pip install --no-build-isolation -e . --override /tmp/torch-pin.txt
+          python scripts/cutcrossentropy_install.py --uv | sh
+          uv pip install black mypy pre-commit types-requests quartodoc jupyter blobfile tiktoken \
+            codecov codecov-cli pytest pytest-cov pytest-retry pytest-sugar pytest-xdist tbparse
+
+      - name: Override with nightly HF packages
+        run: |
+          uv pip install --no-deps \
+            "transformers @ git+https://github.com/huggingface/transformers.git@main" \
+            "peft @ git+https://github.com/huggingface/peft.git@main" \
+            "accelerate @ git+https://github.com/huggingface/accelerate.git@main" \
+            "trl @ git+https://github.com/huggingface/trl.git@main" \
+            "datasets @ git+https://github.com/huggingface/datasets.git@main"
 
       - name: Make sure PyTorch version wasn't clobbered
         run: |
-          python -c "import torch; assert '${{ matrix.pytorch_version }}' in torch.__version__"
+          python -c "import torch; assert '${{ matrix.pytorch_version }}' in torch.__version__, f'Expected torch ${{ matrix.pytorch_version }} but got {torch.__version__}'"
 
       - name: Ensure axolotl CLI was installed
         run: |
@@ -75,42 +99,39 @@ jobs:
 
       - name: Run tests
         run: |
-          pytest -n8 --dist loadfile --ignore=tests/e2e/ --ignore=tests/patched/ tests/
-          pytest tests/patched/
+          pytest -v --durations=10 -n8 --dist loadfile --ignore=tests/e2e/ --ignore=tests/patched/ --ignore=tests/cli/ tests/
+          pytest -v --durations=10 tests/patched/
+          pytest -v --durations=10 tests/cli/
 
-      - name: cleanup pip cache
-        run: |
-          find "$(pip cache dir)/http-v2" -type f -mtime +14 -exec rm {} \;
 
   docker-e2e-tests:
     if: github.repository_owner == 'axolotl-ai-cloud'
     # this job needs to be run on self-hosted GPU runners...
     runs-on: [self-hosted, modal]
-    timeout-minutes: 60
+    timeout-minutes: 120
     needs: [pre-commit, pytest]
 
     strategy:
       fail-fast: false
       matrix:
         include:
-          - cuda: 124
-            cuda_version: 12.4.1
+          - cuda: 128
+            cuda_version: 12.8.1
             python_version: "3.11"
-            pytorch: 2.4.1
+            pytorch: 2.9.1
             num_gpus: 1
             axolotl_extras:
             nightly_build: "true"
-          - cuda: 124
-            cuda_version: 12.4.1
+          - cuda: 128
+            cuda_version: 12.8.1
             python_version: "3.11"
-            pytorch: 2.5.1
+            pytorch: 2.10.0
             num_gpus: 1
             axolotl_extras:
-            nightly_build: "true"
-          - cuda: 124
-            cuda_version: 12.4.1
-            python_version: "3.11"
-            pytorch: 2.6.0
+          - cuda: 130
+            cuda_version: 13.0.0
+            python_version: "3.12"
+            pytorch: 2.9.1
             num_gpus: 1
             axolotl_extras:
             nightly_build: "true"
@@ -124,7 +145,51 @@ jobs:
       - name: Install Modal
         run: |
           python -m pip install --upgrade pip
-          pip install modal==0.71.8 jinja2
+          pip install modal==1.3.0.post1 jinja2
+      - name: Update env vars
+        run: |
+          echo "BASE_TAG=main-base-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}" >> $GITHUB_ENV
+          echo "PYTORCH_VERSION=${{ matrix.pytorch}}" >> $GITHUB_ENV
+          echo "AXOLOTL_ARGS=${{ matrix.axolotl_args}}" >> $GITHUB_ENV
+          echo "AXOLOTL_EXTRAS=${{ matrix.axolotl_extras}}" >> $GITHUB_ENV
+          echo "CUDA=${{ matrix.cuda }}" >> $GITHUB_ENV
+          echo "N_GPUS=${{ matrix.num_gpus }}" >> $GITHUB_ENV
+          echo "E2E_DOCKERFILE=${{ matrix.dockerfile || 'Dockerfile-uv.jinja'}}" >> $GITHUB_ENV
+          echo "NIGHTLY_BUILD=${{ matrix.nightly_build }}" >> $GITHUB_ENV
+      - name: Run tests job on Modal
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+        run: |
+          modal run cicd.e2e_tests
+  docker-e2e-multigpu-tests:
+    if: github.repository_owner == 'axolotl-ai-cloud'
+    # this job needs to be run on self-hosted GPU runners...
+    runs-on: [self-hosted, modal]
+    timeout-minutes: 120
+    needs: [pre-commit, pytest, docker-e2e-tests]
+
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - cuda: 128
+            cuda_version: 12.8.1
+            python_version: "3.11"
+            pytorch: 2.9.1
+            num_gpus: 2
+            axolotl_extras:
+            nightly_build: "true"
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Install Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+      - name: Install Modal
+        run: |
+          python -m pip install --upgrade pip
+          pip install modal==1.3.0.post1 jinja2
       - name: Update env vars
         run: |
           echo "BASE_TAG=main-base-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}" >> $GITHUB_ENV
@@ -135,5 +200,7 @@ jobs:
           echo "N_GPUS=${{ matrix.num_gpus }}" >> $GITHUB_ENV
           echo "NIGHTLY_BUILD=${{ matrix.nightly_build }}" >> $GITHUB_ENV
       - name: Run tests job on Modal
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
         run: |
-          modal run cicd.tests
+          modal run cicd.multigpu

.github/workflows/tests.yml

@@ -6,20 +6,19 @@ on:
     branches:
       - "main"
     paths:
-      - '**.py'
-      - 'requirements.txt'
-      - '.github/workflows/*.yml'
-      - 'requirements-tests.txt'
-      - 'cicd/cicd.sh'
-      - 'cicd/Dockerfile.jinja'
+      - "**.py"
+      - "pyproject.toml"
+      - ".github/workflows/*.yml"
+      - "cicd/cicd.sh"
+      - "cicd/Dockerfile-uv.jinja"
   pull_request:
-      paths:
-       - '**.py'
-       - 'requirements.txt'
-       - '.github/workflows/*.yml'
-       - 'requirements-tests.txt'
-       - 'cicd/cicd.sh'
-       - 'cicd/Dockerfile.jinja'
+    types: [opened, synchronize, reopened, ready_for_review]
+    paths:
+      - "**.py"
+      - "pyproject.toml"
+      - ".github/workflows/*.yml"
+      - "cicd/cicd.sh"
+      - "cicd/Dockerfile-uv.jinja"
   workflow_dispatch:
 
 # Cancel jobs on the same ref if a new one is triggered
@@ -27,184 +26,257 @@ concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: ${{ github.ref != 'refs/heads/main' }}
 
+permissions:
+  contents: read
+
+env:
+  TRANSFORMERS_IS_CI: "yes"
+  UV_SYSTEM_PYTHON: "1"
+
 jobs:
   pre-commit:
     name: pre-commit
     runs-on: ubuntu-latest
+    if: ${{ !github.event.pull_request.draft }}
     steps:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
         with:
           python-version: "3.11"
-          cache: 'pip' # caching pip dependencies
+          cache: "pip" # caching pip dependencies
       - uses: pre-commit/action@v3.0.1
         env:
           SKIP: no-commit-to-branch
 
+  prime-cdn-s3-cache:
+    name: Prefetch S3 once to prime the CDN cache
+    runs-on: ubuntu-latest
+    if: ${{ !github.event.pull_request.draft }}
+    timeout-minutes: 10
+    steps:
+      - name: Restore Cache from S3
+        id: hf-cache-restore-s3
+        run: |
+          curl -v -H "Range: bytes=0-1023" -L https://axolotl-ci.b-cdn.net/hf-cache.tar.zst > /dev/null
+
   pytest:
     name: PyTest
     runs-on: ubuntu-latest
+    if: ${{ !github.event.pull_request.draft }}
+    needs: [prime-cdn-s3-cache]
     strategy:
       fail-fast: false
-      max-parallel: 2
       matrix:
-        python_version: ["3.11"]
-        pytorch_version: ["2.4.1", "2.5.1", "2.6.0"]
-    timeout-minutes: 20
+        python_version: ["3.12", "3.14"]
+        pytorch_version: ["2.9.1", "2.10.0"]
+        exclude:
+          - python_version: "3.14"
+            pytorch_version: "2.9.1"
+    timeout-minutes: 25
 
     steps:
+      - name: cleanup node
+        run: |
+          sudo rm -rf /usr/share/dotnet /usr/local/lib/android /opt/ghc /opt/hostedtoolcache/CodeQL
+
       - name: Check out repository code
         uses: actions/checkout@v4
 
-      - name: Restore HF cache
-        id: hf-cache-restore
-        uses: actions/cache/restore@v4
-        with:
-          path: |
-            /home/runner/.cache/huggingface/hub/datasets--*
-            /home/runner/.cache/huggingface/hub/models--*
-          key: ${{ runner.os }}-hf-hub-cache-${{ hashFiles('**/conftest.py') }}
+      - name: Restore Cache from S3
+        id: hf-cache-restore-s3
+        run: |
+          mkdir -p ~/.cache/huggingface/hub
+          curl -L https://axolotl-ci.b-cdn.net/hf-cache.tar.zst | tar -xpf - -C ~/.cache/huggingface/hub/  --use-compress-program unzstd --strip-components=1
+          ls -ltr ~/.cache/huggingface/hub/
 
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python_version }}
-          cache: 'pip' # caching pip dependencies
 
-      - name: upgrade pip
-        run: |
-          pip3 install --upgrade pip
-          pip3 install --upgrade packaging setuptools wheel
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
 
       - name: Install PyTorch
         run: |
-          pip3 install torch==${{ matrix.pytorch_version }}
+          uv pip install torch==${{ matrix.pytorch_version }} torchvision
+          uv pip freeze | grep -E "^(torch|torchvision)==" > /tmp/torch-pin.txt
 
       - name: Install dependencies
         run: |
-          pip3 show torch
-          pip3 install --no-build-isolation -U -e .
-          python scripts/unsloth_install.py | sh
-          python scripts/cutcrossentropy_install.py | sh
-          pip3 install -r requirements-dev.txt -r requirements-tests.txt
+          uv pip install --no-build-isolation -e . --override /tmp/torch-pin.txt
+          python scripts/cutcrossentropy_install.py --uv | sh
+          uv pip install black mypy pre-commit types-requests quartodoc jupyter blobfile tiktoken \
+            codecov codecov-cli pytest pytest-cov pytest-retry pytest-sugar pytest-xdist tbparse
 
       - name: Make sure PyTorch version wasn't clobbered
         run: |
-          python -c "import torch; assert '${{ matrix.pytorch_version }}' in torch.__version__"
+          python -c "import torch; assert '${{ matrix.pytorch_version }}' in torch.__version__, f'Expected torch ${{ matrix.pytorch_version }} but got {torch.__version__}'"
 
       - name: Ensure axolotl CLI was installed
         run: |
           axolotl --help
 
+      - name: Pre-Download dataset fixture
+        run: |
+          hf download --repo-type=dataset axolotl-ai-internal/axolotl-oss-dataset-fixtures
+
+      - name: Show HF cache
+        run: hf cache ls
+
       - name: Run tests
         run: |
-          pytest -v -n8 --dist loadfile --ignore=tests/e2e/ --ignore=tests/patched/ tests/
-          pytest -v tests/patched/
+          df -h
+          pytest -v --durations=10 -n4 --dist loadfile --ignore=tests/e2e/ --ignore=tests/patched/ --ignore=tests/cli/ --ignore=tests/monkeypatch/ tests/ --cov=axolotl --cov-report=xml
+          df -h
+          pytest -v --durations=10 tests/monkeypatch/ --cov=axolotl --cov-append --cov-report=xml
+          df -h
+          pytest -v --durations=10 tests/patched/ --cov=axolotl --cov-append --cov-report=xml
+          df -h
+          pytest -v --durations=10 tests/cli/ --cov=axolotl --cov-append --cov-report=xml
 
-      - name: cleanup pip cache
-        run: |
-          find "$(pip cache dir)/http-v2" -type f -mtime +14 -exec rm {} \;
+      - name: Show HF cache
+        run: hf cache ls
 
-      - name: Save HF cache
-        id: hf-cache
-        uses: actions/cache/save@v4
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v5
         with:
-          path: |
-            /home/runner/.cache/huggingface/hub/datasets--*
-            /home/runner/.cache/huggingface/hub/models--*
-          key: ${{ steps.hf-cache-restore.outputs.cache-primary-key }}
+          token: ${{ secrets.CODECOV_TOKEN }}
+          files: ./coverage.xml
+          flags: unittests,pytorch-${{ matrix.pytorch_version }}
+          fail_ci_if_error: false
 
   pytest-sdist:
     name: PyTest from Source Dist
     runs-on: ubuntu-latest
+    if: ${{ !github.event.pull_request.draft }}
+    needs: [prime-cdn-s3-cache]
     strategy:
       fail-fast: false
-      max-parallel: 1
       matrix:
-        python_version: ["3.11"]
-        pytorch_version: ["2.4.1", "2.5.1", "2.6.0"]
-    timeout-minutes: 20
+        python_version: ["3.12", "3.14"]
+        pytorch_version: ["2.9.1", "2.10.0"]
+        exclude:
+          - python_version: "3.14"
+            pytorch_version: "2.9.1"
+    timeout-minutes: 30
 
     steps:
+      - name: cleanup node
+        run: |
+          sudo rm -rf /usr/share/dotnet /usr/local/lib/android /opt/ghc /opt/hostedtoolcache/CodeQL
+
       - name: Check out repository code
         uses: actions/checkout@v4
 
-      - name: Restore HF cache
-        id: hf-cache-restore
-        uses: actions/cache/restore@v4
-        with:
-          path: |
-            /home/runner/.cache/huggingface/hub/datasets--*
-            /home/runner/.cache/huggingface/hub/models--*
-          key: ${{ runner.os }}-hf-hub-cache-${{ hashFiles('**/conftest.py') }}
+      - name: Restore Cache from S3
+        id: hf-cache-restore-s3
+        run: |
+          mkdir -p ~/.cache/huggingface/hub
+          curl -L https://axolotl-ci.b-cdn.net/hf-cache.tar.zst | tar -xpf - -C ~/.cache/huggingface/hub/  --use-compress-program unzstd --strip-components=1
+          ls -ltr ~/.cache/huggingface/hub/
 
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python_version }}
-          cache: 'pip' # caching pip dependencies
 
-      - name: upgrade pip
-        run: |
-          pip3 install --upgrade pip
-          pip3 install --upgrade packaging setuptools setuptools_scm build wheel
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
 
       - name: Install PyTorch
         run: |
-          pip3 install torch==${{ matrix.pytorch_version }}
+          uv pip install torch==${{ matrix.pytorch_version }} torchvision
+          uv pip freeze | grep -E "^(torch|torchvision)==" > /tmp/torch-pin.txt
 
       - name: Install dependencies
         run: |
-          pip3 show torch
+          uv pip install packaging setuptools_scm build wheel psutil
           python -m build --no-isolation --sdist
-          pip3 install --no-build-isolation dist/axolotl*.tar.gz
-          python scripts/unsloth_install.py | sh
-          python scripts/cutcrossentropy_install.py | sh
-          pip3 install -r requirements-dev.txt -r requirements-tests.txt
+          uv pip install --no-build-isolation dist/axolotl*.tar.gz --override /tmp/torch-pin.txt
+          python scripts/cutcrossentropy_install.py --uv | sh
+          uv pip install black mypy pre-commit types-requests quartodoc jupyter blobfile tiktoken \
+            codecov codecov-cli pytest pytest-cov pytest-retry pytest-sugar pytest-xdist tbparse
 
       - name: Make sure PyTorch version wasn't clobbered
         run: |
-          python -c "import torch; assert '${{ matrix.pytorch_version }}' in torch.__version__"
+          python -c "import torch; assert '${{ matrix.pytorch_version }}' in torch.__version__, f'Expected torch ${{ matrix.pytorch_version }} but got {torch.__version__}'"
 
       - name: Ensure axolotl CLI was installed
         run: |
           axolotl --help
 
+      - name: Verify agent docs are discoverable
+        run: |
+          # Agent docs live in docs/agents/ (source of truth) and are resolved
+          # at runtime from the repo checkout or via `axolotl fetch docs`
+          axolotl agent-docs --list
+          axolotl agent-docs | grep -q "Fine-tuning framework"
+          axolotl agent-docs grpo | grep -q "GRPO"
+          axolotl agent-docs sft | grep -q "SFT"
+          python -c "from axolotl.cli.agent_docs import get_doc, list_topics; assert len(list_topics()) >= 5; assert 'GRPO' in get_doc('grpo')"
+
+      - name: Show HF cache
+        run: hf cache ls
+
       - name: Run tests
         run: |
-          pytest -v -n8 --dist loadfile --ignore=tests/e2e/ --ignore=tests/patched/ tests/
-          pytest -v tests/patched/
+          pytest -v --durations=10 -n4 --dist loadfile --ignore=tests/e2e/ --ignore=tests/patched/ --ignore=tests/cli/ --ignore=tests/monkeypatch/ tests/ --cov=axolotl --cov-report=xml
+          pytest -v --durations=10 tests/monkeypatch/ --cov=axolotl --cov-append --cov-report=xml
+          pytest -v --durations=10 tests/cli/
 
-      - name: cleanup pip cache
-        run: |
-          find "$(pip cache dir)/http-v2" -type f -mtime +14 -exec rm {} \;
+      - name: Show HF cache
+        run: hf cache ls
 
-      - name: Save HF cache
-        id: hf-cache
-        uses: actions/cache/save@v4
+  gate-skip-e2e:
+    needs: [pre-commit]
+    runs-on: ubuntu-latest
+    outputs:
+      skip: ${{ steps.compute.outputs.skip }}
+    steps:
+      - uses: actions/github-script@v7
+        id: compute
         with:
-          path: |
-            /home/runner/.cache/huggingface/hub/datasets--*
-            /home/runner/.cache/huggingface/hub/models--*
-          key: ${{ steps.hf-cache-restore.outputs.cache-primary-key }}
+          script: |
+            const token = /\[skip-e2e\]/i;
+            let msg = '';
+            if (context.eventName === 'push') {
+              msg = context.payload.head_commit?.message || '';
+            } else if (context.eventName === 'pull_request') {
+              const { owner, repo } = context.repo;
+              const prNumber = context.payload.pull_request.number;
+              const commits = await github.paginate(
+                github.rest.pulls.listCommits,
+                { owner, repo, pull_number: prNumber, per_page: 100 }
+              );
+              msg = commits.at(-1)?.commit?.message || '';
+            }
+            const title = context.payload.pull_request?.title || '';
+            const body  = context.payload.pull_request?.body  || '';
+            const skip = token.test(msg) || token.test(title) || token.test(body);
+            core.setOutput('skip', String(skip));
 
   docker-e2e-tests-1st:
-    if: ${{ ! contains(github.event.commits[0].message, '[skip e2e]') && github.repository_owner == 'axolotl-ai-cloud' }}
+    # Run this job first as a gate for running the remainder of the test matrix
+    if: >
+      github.repository_owner == 'axolotl-ai-cloud' &&
+      (github.event_name != 'pull_request' || !github.event.pull_request.draft) &&
+      needs.gate-skip-e2e.outputs.skip != 'true'
     # this job needs to be run on self-hosted GPU runners...
     runs-on: [self-hosted, modal]
-    timeout-minutes: 90
-    needs: [pre-commit, pytest, pytest-sdist]
+    timeout-minutes: 120
+    needs: [pre-commit, pytest]
 
     strategy:
       fail-fast: false
       matrix:
         include:
-          - cuda: 124
-            cuda_version: 12.4.1
-            python_version: "3.11"
-            pytorch: 2.5.1
+          - cuda: 130
+            cuda_version: 13.0.0
+            python_version: "3.12"
+            pytorch: 2.9.1
             num_gpus: 1
-            axolotl_extras: vllm
+            axolotl_extras:
     steps:
       - name: Checkout
         uses: actions/checkout@v4
@@ -215,7 +287,7 @@ jobs:
       - name: Install Modal
         run: |
           python -m pip install --upgrade pip
-          pip install modal==0.71.8 jinja2
+          pip install modal==1.3.0.post1 jinja2
       - name: Update env vars
         run: |
           echo "BASE_TAG=main-base-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}" >> $GITHUB_ENV
@@ -225,31 +297,45 @@ jobs:
           echo "CUDA=${{ matrix.cuda }}" >> $GITHUB_ENV
           echo "MODAL_IMAGE_BUILDER_VERSION=2024.10" >> $GITHUB_ENV
           echo "N_GPUS=${{ matrix.num_gpus }}" >> $GITHUB_ENV
+          echo "E2E_DOCKERFILE=${{ matrix.dockerfile || 'Dockerfile-uv.jinja'}}" >> $GITHUB_ENV
       - name: Run tests job on Modal
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
         run: |
-          modal run cicd.tests
+          modal run cicd.e2e_tests
 
   docker-e2e-tests:
-    if: github.repository_owner == 'axolotl-ai-cloud'
+    if: >
+      github.repository_owner == 'axolotl-ai-cloud' &&
+      (github.event_name != 'pull_request' || !github.event.pull_request.draft) &&
+      needs.gate-skip-e2e.outputs.skip != 'true'
     # this job needs to be run on self-hosted GPU runners...
     runs-on: [self-hosted, modal]
-    timeout-minutes: 90
-    needs: [pre-commit, pytest, docker-e2e-tests-1st]
+    timeout-minutes: 120
+    # Only run the remainder of the matrix if the first e2e check passed;
+    # this is to save on wasted compute costs for known failures that get caught in the first run
+    needs: [pre-commit, pytest, gate-skip-e2e, docker-e2e-tests-1st]
 
     strategy:
       fail-fast: false
       matrix:
         include:
-          - cuda: 124
-            cuda_version: 12.4.1
+          - cuda: 128
+            cuda_version: 12.8.1
             python_version: "3.11"
-            pytorch: 2.4.1
+            pytorch: 2.9.1
             num_gpus: 1
             axolotl_extras:
-          - cuda: 124
-            cuda_version: 12.4.1
+          - cuda: 128
+            cuda_version: 12.8.1
             python_version: "3.11"
-            pytorch: 2.6.0
+            pytorch: 2.10.0
+            num_gpus: 1
+            axolotl_extras:
+          - cuda: 130
+            cuda_version: 13.0.0
+            python_version: "3.11"
+            pytorch: 2.9.1
             num_gpus: 1
             axolotl_extras:
     steps:
@@ -262,7 +348,51 @@ jobs:
       - name: Install Modal
         run: |
           python -m pip install --upgrade pip
-          pip install modal==0.71.8 jinja2
+          pip install modal==1.3.0.post1 jinja2
+      - name: Update env vars
+        run: |
+          echo "BASE_TAG=main-base-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}" >> $GITHUB_ENV
+          echo "PYTORCH_VERSION=${{ matrix.pytorch}}" >> $GITHUB_ENV
+          echo "AXOLOTL_ARGS=${{ matrix.axolotl_args}}" >> $GITHUB_ENV
+          echo "AXOLOTL_EXTRAS=${{ matrix.axolotl_extras}}" >> $GITHUB_ENV
+          echo "CUDA=${{ matrix.cuda }}" >> $GITHUB_ENV
+          echo "MODAL_IMAGE_BUILDER_VERSION=2024.10" >> $GITHUB_ENV
+          echo "N_GPUS=${{ matrix.num_gpus }}" >> $GITHUB_ENV
+          echo "GPU_TYPE=${{ matrix.gpu_type || 'L40S'}}" >> $GITHUB_ENV
+          echo "E2E_DOCKERFILE=${{ matrix.dockerfile || 'Dockerfile-uv.jinja'}}" >> $GITHUB_ENV
+      - name: Run tests job on Modal
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+        run: |
+          modal run cicd.e2e_tests
+
+  docker-e2e-cleanup:
+    runs-on: [self-hosted, modal]
+    timeout-minutes: 90
+    needs: [docker-e2e-tests]
+    if: ${{ !github.event.pull_request.draft }}
+
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - cuda: 128
+            cuda_version: 12.8.1
+            python_version: "3.11"
+            pytorch: 2.9.1
+            num_gpus: 1
+            axolotl_extras:
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Install Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+      - name: Install Modal
+        run: |
+          python -m pip install --upgrade pip
+          pip install modal==1.3.0.post1 jinja2
       - name: Update env vars
         run: |
           echo "BASE_TAG=main-base-py${{ matrix.python_version }}-cu${{ matrix.cuda }}-${{ matrix.pytorch }}" >> $GITHUB_ENV
@@ -274,4 +404,4 @@ jobs:
           echo "N_GPUS=${{ matrix.num_gpus }}" >> $GITHUB_ENV
       - name: Run tests job on Modal
         run: |
-          modal run cicd.tests
+          modal run cicd.cleanup

.gitignore

@@ -181,8 +181,15 @@ prepared-datasets/
 submit.sh
 *.out*
 
+# Quartodoc generated files
+objects.json
+site_libs/
+
 typings/
 out/
 
 # vim
 *.swp
+
+# scm auto-versioning
+src/axolotl/_version.py

.isort.cfg

@@ -1,3 +0,0 @@
-[settings]
-profile=black
-known_third_party=wandb,comet_ml

.pre-commit-config.yaml

@@ -3,31 +3,21 @@ default_language_version:
 
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v6.0.0
     hooks:
     -   id: check-yaml
     -   id: end-of-file-fixer
     -   id: trailing-whitespace
     -   id: no-commit-to-branch
         args: ['--branch', 'main']
--   repo: https://github.com/psf/black
-    rev: 23.3.0
+-   repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.15.8
     hooks:
-    -   id: black
--   repo: https://github.com/pycqa/isort
-    rev: 5.12.0
-    hooks:
-      - id: isort
--   repo: https://github.com/PyCQA/flake8
-    rev: 6.1.0
-    hooks:
-    - id: flake8
--   repo: https://github.com/PyCQA/pylint
-    rev: v3.3.0
-    hooks:
-    - id: pylint
+    -   id: ruff
+        args: [--fix]
+    -   id: ruff-format
 -   repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.3.0
+    rev: v1.19.1
     hooks:
     - id: mypy
       additional_dependencies:
@@ -36,7 +26,7 @@ repos:
             'pydantic>=2.5.3',
         ]
 -   repo: https://github.com/PyCQA/bandit
-    rev: 1.7.5
+    rev: 1.9.4
     hooks:
     -   id: bandit
         args: [

.pylintrc

@@ -1,15 +0,0 @@
-[MASTER]
-init-hook="from pylint.config import find_default_config_files; import sys; sys.path.append(next(find_default_config_files()).parent.as_posix())"
-
-[TYPECHECK]
-
-# List of members which are set dynamically and missed by Pylint inference
-# system, and so shouldn't trigger E1101 when accessed.
-generated-members=numpy.*, torch.*
-
-
-[pylint.messages_control]
-disable=missing-function-docstring, line-too-long, import-error,
-    too-many-arguments, too-many-locals, too-many-statements, too-many-branches, too-few-public-methods,
-    too-many-instance-attributes, fixme, import-outside-toplevel, logging-fstring-interpolation,
-    too-many-positional-arguments, possibly-used-before-assignment

.runpod/.gitignore

@@ -0,0 +1,161 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/#use-with-ide
+.pdm.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
+pod/scripts/config.yaml

.runpod/Dockerfile

@@ -0,0 +1,19 @@
+FROM axolotlai/axolotl-cloud:main-py3.11-cu124-2.6.0
+
+COPY .runpod/requirements.txt /requirements.txt
+RUN --mount=type=cache,target=/root/.cache/pip \
+    python3 -m pip install --upgrade pip && \
+    python3 -m pip install --upgrade -r /requirements.txt
+
+# Environment settings
+ARG BASE_VOLUME="/runpod-volume"
+ENV BASE_VOLUME=$BASE_VOLUME
+ENV HF_DATASETS_CACHE="${BASE_VOLUME}/huggingface-cache/datasets"
+ENV HUGGINGFACE_HUB_CACHE="${BASE_VOLUME}/huggingface-cache/hub"
+ENV HF_HUB_CACHE="${BASE_VOLUME}/huggingface-cache/hub"
+ENV TRANSFORMERS_CACHE="${BASE_VOLUME}/huggingface-cache/hub"
+
+COPY .runpod/src /src
+
+WORKDIR /src
+CMD ["python3", "/src/handler.py"]

.runpod/README.md

@@ -0,0 +1,335 @@
+<h1>LLM Post Training- Full fine-tune, LoRA, QLoRa etc. Llama/Mistral/Gemma and more</h1>
+
+# Configuration Options
+
+This document outlines all available configuration options for training models. The configuration can be provided as a JSON request.
+
+## Usage
+
+You can use these configuration Options:
+
+1. As a JSON request body:
+
+```json
+{
+  "input": {
+    "user_id": "user",
+    "model_id": "model-name",
+    "run_id": "run-id",
+    "credentials": {
+      "wandb_api_key": "", # add your Weights & biases key. TODO:  you will be able to set this in Enviornment variables.
+      "hf_token": "", # add your HF_token. TODO:  you will be able to set this in Enviornment variables.
+    },
+    "args": {
+      "base_model": "NousResearch/Llama-3.2-1B",
+      // ... other options
+    }
+  }
+}
+```
+
+## Configuration Options
+
+### Model Configuration
+
+| Option              | Description                                                                                   | Default              |
+| ------------------- | --------------------------------------------------------------------------------------------- | -------------------- |
+| `base_model`        | Path to the base model (local or HuggingFace)                                                 | Required             |
+| `base_model_config` | Configuration path for the base model                                                         | Same as base_model   |
+| `revision_of_model` | Specific model revision from HuggingFace hub                                                  | Latest               |
+| `tokenizer_config`  | Custom tokenizer configuration path                                                           | Optional             |
+| `model_type`        | Type of model to load                                                                         | AutoModelForCausalLM |
+| `tokenizer_type`    | Type of tokenizer to use                                                                      | AutoTokenizer        |
+| `hub_model_id`      | Repository ID where the model will be pushed on Hugging Face Hub (format: username/repo-name) | Optional             |
+
+## Model Family Identification
+
+| Option                     | Default | Description                    |
+| -------------------------- | ------- | ------------------------------ |
+| `is_falcon_derived_model`  | `false` | Whether model is Falcon-based  |
+| `is_llama_derived_model`   | `false` | Whether model is LLaMA-based   |
+| `is_qwen_derived_model`    | `false` | Whether model is Qwen-based    |
+| `is_mistral_derived_model` | `false` | Whether model is Mistral-based |
+
+## Model Configuration Overrides
+
+| Option                                          | Default    | Description                        |
+| ----------------------------------------------- | ---------- | ---------------------------------- |
+| `overrides_of_model_config.rope_scaling.type`   | `"linear"` | RoPE scaling type (linear/dynamic) |
+| `overrides_of_model_config.rope_scaling.factor` | `1.0`      | RoPE scaling factor                |
+
+### Model Loading Options
+
+| Option         | Description                   | Default |
+| -------------- | ----------------------------- | ------- |
+| `load_in_8bit` | Load model in 8-bit precision | false   |
+| `load_in_4bit` | Load model in 4-bit precision | false   |
+| `bf16`         | Use bfloat16 precision        | false   |
+| `fp16`         | Use float16 precision         | false   |
+| `tf32`         | Use tensor float 32 precision | false   |
+
+## Memory and Device Settings
+
+| Option             | Default   | Description             |
+| ------------------ | --------- | ----------------------- |
+| `gpu_memory_limit` | `"20GiB"` | GPU memory limit        |
+| `lora_on_cpu`      | `false`   | Load LoRA on CPU        |
+| `device_map`       | `"auto"`  | Device mapping strategy |
+| `max_memory`       | `null`    | Max memory per device   |
+
+## Training Hyperparameters
+
+| Option                        | Default   | Description                 |
+| ----------------------------- | --------- | --------------------------- |
+| `gradient_accumulation_steps` | `1`       | Gradient accumulation steps |
+| `micro_batch_size`            | `2`       | Batch size per GPU          |
+| `eval_batch_size`             | `null`    | Evaluation batch size       |
+| `num_epochs`                  | `4`       | Number of training epochs   |
+| `warmup_steps`                | `100`     | Warmup steps                |
+| `warmup_ratio`                | `0.05`    | Warmup ratio                |
+| `learning_rate`               | `0.00003` | Learning rate               |
+| `lr_quadratic_warmup`         | `false`   | Quadratic warmup            |
+| `logging_steps`               | `null`    | Logging frequency           |
+| `eval_steps`                  | `null`    | Evaluation frequency        |
+| `evals_per_epoch`             | `null`    | Evaluations per epoch       |
+| `save_strategy`               | `"epoch"` | Checkpoint saving strategy  |
+| `save_steps`                  | `null`    | Saving frequency            |
+| `saves_per_epoch`             | `null`    | Saves per epoch             |
+| `save_total_limit`            | `null`    | Maximum checkpoints to keep |
+| `max_steps`                   | `null`    | Maximum training steps      |
+
+### Dataset Configuration
+
+```yaml
+datasets:
+  - path: vicgalle/alpaca-gpt4 # HuggingFace dataset or TODO: You will be able to add the local path.
+    type: alpaca # Format type (alpaca, gpteacher, oasst, etc.)
+    ds_type: json # Dataset type
+    data_files: path/to/data # Source data files
+    train_on_split: train # Dataset split to use
+```
+
+## Chat Template Settings
+
+| Option                   | Default                          | Description            |
+| ------------------------ | -------------------------------- | ---------------------- |
+| `chat_template`          | `"tokenizer_default"`            | Chat template type     |
+| `chat_template_jinja`    | `null`                           | Custom Jinja template  |
+| `default_system_message` | `"You are a helpful assistant."` | Default system message |
+
+## Dataset Processing
+
+| Option                            | Default                    | Description                         |
+| --------------------------------- | -------------------------- | ----------------------------------- |
+| `dataset_prepared_path`           | `"data/last_run_prepared"` | Path for prepared dataset           |
+| `push_dataset_to_hub`             | `""`                       | Push dataset to HF hub              |
+| `dataset_num_proc`                | `4`                        | Number of preprocessing processes   |
+| `dataset_keep_in_memory`          | `false`                    | Keep dataset in memory              |
+| `shuffle_merged_datasets`         | `true`                     | Shuffle merged datasets             |
+| `shuffle_before_merging_datasets` | `false`                    | Shuffle each dataset before merging |
+| `dataset_exact_deduplication`     | `true`                     | Deduplicate datasets                |
+
+## LoRA Configuration
+
+| Option                     | Default                | Description                    |
+| -------------------------- | ---------------------- | ------------------------------ |
+| `adapter`                  | `"lora"`               | Adapter type (lora/qlora)      |
+| `lora_model_dir`           | `""`                   | Directory with pretrained LoRA |
+| `lora_r`                   | `8`                    | LoRA attention dimension       |
+| `lora_alpha`               | `16`                   | LoRA alpha parameter           |
+| `lora_dropout`             | `0.05`                 | LoRA dropout                   |
+| `lora_target_modules`      | `["q_proj", "v_proj"]` | Modules to apply LoRA          |
+| `lora_target_linear`       | `false`                | Target all linear modules      |
+| `peft_layers_to_transform` | `[]`                   | Layers to transform            |
+| `lora_modules_to_save`     | `[]`                   | Modules to save                |
+| `lora_fan_in_fan_out`      | `false`                | Fan in/out structure           |
+
+## Optimization Settings
+
+| Option                    | Default | Description                |
+| ------------------------- | ------- | -------------------------- |
+| `train_on_inputs`         | `false` | Train on input prompts     |
+| `group_by_length`         | `false` | Group by sequence length   |
+| `gradient_checkpointing`  | `false` | Use gradient checkpointing |
+| `early_stopping_patience` | `3`     | Early stopping patience    |
+
+## Learning Rate Scheduling
+
+| Option                     | Default    | Description          |
+| -------------------------- | ---------- | -------------------- |
+| `lr_scheduler`             | `"cosine"` | Scheduler type       |
+| `lr_scheduler_kwargs`      | `{}`       | Scheduler parameters |
+| `cosine_min_lr_ratio`      | `null`     | Minimum LR ratio     |
+| `cosine_constant_lr_ratio` | `null`     | Constant LR ratio    |
+| `lr_div_factor`            | `null`     | LR division factor   |
+
+## Optimizer Settings
+
+| Option                 | Default      | Description         |
+| ---------------------- | ------------ | ------------------- |
+| `optimizer`            | `"adamw_hf"` | Optimizer choice    |
+| `optim_args`           | `{}`         | Optimizer arguments |
+| `optim_target_modules` | `[]`         | Target modules      |
+| `weight_decay`         | `null`       | Weight decay        |
+| `adam_beta1`           | `null`       | Adam beta1          |
+| `adam_beta2`           | `null`       | Adam beta2          |
+| `adam_epsilon`         | `null`       | Adam epsilon        |
+| `max_grad_norm`        | `null`       | Gradient clipping   |
+
+## Attention Implementations
+
+| Option                     | Default | Description                   |
+| -------------------------- | ------- | ----------------------------- |
+| `flash_optimum`            | `false` | Use better transformers       |
+| `xformers_attention`       | `false` | Use xformers                  |
+| `flash_attention`          | `false` | Use flash attention           |
+| `flash_attn_cross_entropy` | `false` | Flash attention cross entropy |
+| `flash_attn_rms_norm`      | `false` | Flash attention RMS norm      |
+| `flash_attn_fuse_mlp`      | `false` | Fuse MLP operations           |
+| `sdp_attention`            | `false` | Use scaled dot product        |
+| `s2_attention`             | `false` | Use shifted sparse attention  |
+
+## Tokenizer Modifications
+
+| Option           | Default | Description                  |
+| ---------------- | ------- | ---------------------------- |
+| `special_tokens` | -       | Special tokens to add/modify |
+| `tokens`         | `[]`    | Additional tokens            |
+
+## Distributed Training
+
+| Option                  | Default | Description           |
+| ----------------------- | ------- | --------------------- |
+| `fsdp`                  | `null`  | FSDP configuration    |
+| `fsdp_config`           | `null`  | FSDP config options   |
+| `deepspeed`             | `null`  | Deepspeed config path |
+| `ddp_timeout`           | `null`  | DDP timeout           |
+| `ddp_bucket_cap_mb`     | `null`  | DDP bucket capacity   |
+| `ddp_broadcast_buffers` | `null`  | DDP broadcast buffers |
+
+<details>
+<summary><h3>Example Configuration Request:</h3></summary>
+
+Here's a complete example for fine-tuning a LLaMA model using LoRA:
+
+```json
+{
+  "input": {
+    "user_id": "user",
+    "model_id": "llama-test",
+    "run_id": "test-run",
+    "credentials": {
+      "wandb_api_key": "",
+      "hf_token": ""
+    },
+    "args": {
+      "base_model": "NousResearch/Llama-3.2-1B",
+      "load_in_8bit": false,
+      "load_in_4bit": false,
+      "strict": false,
+      "datasets": [
+        {
+          "path": "teknium/GPT4-LLM-Cleaned",
+          "type": "alpaca"
+        }
+      ],
+      "dataset_prepared_path": "last_run_prepared",
+      "val_set_size": 0.1,
+      "output_dir": "./outputs/lora-out",
+      "adapter": "lora",
+      "sequence_len": 2048,
+      "sample_packing": true,
+      "eval_sample_packing": true,
+      "pad_to_sequence_len": true,
+      "lora_r": 16,
+      "lora_alpha": 32,
+      "lora_dropout": 0.05,
+      "lora_target_modules": [
+        "gate_proj",
+        "down_proj",
+        "up_proj",
+        "q_proj",
+        "v_proj",
+        "k_proj",
+        "o_proj"
+      ],
+      "gradient_accumulation_steps": 2,
+      "micro_batch_size": 2,
+      "num_epochs": 1,
+      "optimizer": "adamw_8bit",
+      "lr_scheduler": "cosine",
+      "learning_rate": 0.0002,
+      "train_on_inputs": false,
+      "group_by_length": false,
+      "bf16": "auto",
+      "tf32": false,
+      "gradient_checkpointing": true,
+      "logging_steps": 1,
+      "flash_attention": true,
+      "loss_watchdog_threshold": 5,
+      "loss_watchdog_patience": 3,
+      "warmup_steps": 10,
+      "evals_per_epoch": 4,
+      "saves_per_epoch": 1,
+      "weight_decay": 0,
+      "hub_model_id": "runpod/llama-fr-lora",
+      "wandb_name": "test-run-1",
+      "wandb_project": "test-run-1",
+      "wandb_entity": "axo-test",
+      "special_tokens": {
+        "pad_token": "<|end_of_text|>"
+      }
+    }
+  }
+}
+```
+
+</details>
+
+### Advanced Features
+
+#### Wandb Integration
+
+- `wandb_project`: Project name for Weights & Biases
+- `wandb_entity`: Team name in W&B
+- `wandb_watch`: Monitor model with W&B
+- `wandb_name`: Name of the W&B run
+- `wandb_run_id`: ID for the W&B run
+
+#### Performance Optimization
+
+- `sample_packing`: Enable efficient sequence packing
+- `eval_sample_packing`: Use sequence packing during evaluation
+- `torch_compile`: Enable PyTorch 2.0 compilation
+- `flash_attention`: Use Flash Attention implementation
+- `xformers_attention`: Use xFormers attention implementation
+
+### Available Optimizers
+
+The following optimizers are supported:
+
+- `adamw_hf`: HuggingFace's AdamW implementation
+- `adamw_torch`: PyTorch's AdamW
+- `adamw_torch_fused`: Fused AdamW implementation
+- `adamw_torch_xla`: XLA-optimized AdamW
+- `adamw_apex_fused`: NVIDIA Apex fused AdamW
+- `adafactor`: Adafactor optimizer
+- `adamw_anyprecision`: Anyprecision AdamW
+- `adamw_bnb_8bit`: 8-bit AdamW from bitsandbytes
+- `lion_8bit`: 8-bit Lion optimizer
+- `lion_32bit`: 32-bit Lion optimizer
+- `sgd`: Stochastic Gradient Descent
+- `adagrad`: Adagrad optimizer
+
+## Notes
+
+- Set `load_in_8bit: true` or `load_in_4bit: true` for memory-efficient training
+- Enable `flash_attention: true` for faster training on modern GPUs
+- Use `gradient_checkpointing: true` to reduce memory usage
+- Adjust `micro_batch_size` and `gradient_accumulation_steps` based on your GPU memory
+
+For more detailed information, please refer to the [documentation](https://axolotl-ai-cloud.github.io/axolotl/docs/config-reference.html).
+
+### Errors:
+
+- if you face any issues with the Flash Attention-2, Delete yoor worker and Re-start.

.runpod/hub.json

@@ -0,0 +1,93 @@
+{
+  "title": "Axolotl Fine-Tuning",
+  "description": "Serverless fine-tuning of open-source LLMs with Axolotl. Supports LoRA, QLoRA, DPO, and more using Hugging Face models and datasets.",
+  "type": "serverless",
+  "category": "language",
+  "iconUrl": "https://avatars.githubusercontent.com/u/167502477",
+  "config": {
+    "runsOn": "GPU",
+    "containerDiskInGb": 200,
+    "gpuCount": 1,
+    "allowedCudaVersions": [
+      "12.8",
+      "12.7",
+      "12.6",
+      "12.5",
+      "12.4"
+    ],
+    "presets": [],
+    "env": [
+      {
+        "key": "TOKENIZER",
+        "input": {
+          "name": "Tokenizer",
+          "type": "string",
+          "description": "Name or path of the Hugging Face tokenizer to use.",
+          "default": "",
+          "advanced": true
+        }
+      },
+      {
+        "key": "MAX_NUM_SEQS",
+        "input": {
+          "name": "Max Num Seqs",
+          "type": "number",
+          "description": "Maximum number of sequences per iteration.",
+          "default": 256,
+          "advanced": true
+        }
+      },
+      {
+        "key": "DISABLE_LOG_STATS",
+        "input": {
+          "name": "Disable Log Stats",
+          "type": "boolean",
+          "description": "Disable logging statistics.",
+          "default": false,
+          "trueValue": "true",
+          "falseValue": "false"
+        }
+      },
+      {
+        "key": "LOAD_FORMAT",
+        "input": {
+          "name": "Load Format",
+          "type": "string",
+          "description": "The format of the model weights to load.",
+          "default": "auto",
+          "options": [
+            {
+              "label": "auto",
+              "value": "auto"
+            },
+            {
+              "label": "pt",
+              "value": "pt"
+            },
+            {
+              "label": "safetensors",
+              "value": "safetensors"
+            },
+            {
+              "label": "npcache",
+              "value": "npcache"
+            },
+            {
+              "label": "dummy",
+              "value": "dummy"
+            },
+            {
+              "label": "tensorizer",
+              "value": "tensorizer"
+            },
+            {
+              "label": "bitsandbytes",
+              "value": "bitsandbytes"
+            }
+          ],
+          "advanced": true
+        }
+      }
+    ]
+  }
+}

.runpod/requirements.txt

@@ -0,0 +1,7 @@
+# Required Python packages get listed here, one per line.
+# Reccomended to lock the version number to avoid unexpected changes.
+
+# You can also install packages from a git repository, e.g.:
+# git+https://github.com/runpod/runpod-python.git
+# To learn more, see https://pip.pypa.io/en/stable/reference/requirements-file-format/
+runpod~=1.7.0

.runpod/src/config/config.yaml

@@ -0,0 +1,564 @@
+# # This is the huggingface model that contains *.pt, *.safetensors, or *.bin files
+# # This can also be a relative path to a model on disk
+# base_model: ./llama-7b-hf
+# # You can specify an ignore pattern if the model repo contains more than 1 model type (*.pt, etc)
+# base_model_ignore_patterns:
+# # If the base_model repo on hf hub doesn't include configuration .json files,
+# # You can set that here, or leave this empty to default to base_model
+# base_model_config: ./llama-7b-hf
+# # You can specify to choose a specific model revision from huggingface hub
+# model_revision:
+# # Optional tokenizer configuration override in case you want to use a different tokenizer
+# # than the one defined in the base model
+# tokenizer_config:
+# # If you want to specify the type of model to load, AutoModelForCausalLM is a good choice too
+# model_type: AutoModelForCausalLM
+# # Corresponding tokenizer for the model AutoTokenizer is a good choice
+# tokenizer_type: AutoTokenizer
+# # Trust remote code for untrusted source
+# trust_remote_code:
+# # use_fast option for tokenizer loading from_pretrained, default to True
+# tokenizer_use_fast:
+# # Whether to use the legacy tokenizer setting, defaults to True
+# tokenizer_legacy:
+# # Resize the model embeddings when new tokens are added to multiples of 32
+# # This is reported to improve training speed on some models
+# resize_token_embeddings_to_32x:
+
+# # Used to identify which the model is based on
+# is_falcon_derived_model:
+# is_llama_derived_model:
+# # Please note that if you set this to true, `padding_side` will be set to "left" by default
+# is_mistral_derived_model:
+# is_qwen_derived_model:
+
+# # optional overrides to the base model configuration
+# model_config:
+#   # RoPE Scaling https://github.com/huggingface/transformers/pull/24653
+#   rope_scaling:
+#     type: # linear | dynamic
+#     factor: # float
+
+# # Whether you are training a 4-bit GPTQ quantized model
+# gptq: true
+# gptq_groupsize: 128 # group size
+# gptq_model_v1: false # v1 or v2
+
+# # This will attempt to quantize the model down to 8 bits and use adam 8 bit optimizer
+# load_in_8bit: true
+# # Use bitsandbytes 4 bit
+# load_in_4bit:
+
+# # Use CUDA bf16
+# bf16: true # bool or 'full' for `bf16_full_eval`. require >=ampere
+# # Use CUDA fp16
+# fp16: true
+# # Use CUDA tf32
+# tf32: true # require >=ampere
+
+# # No AMP (automatic mixed precision)
+# bfloat16: true # require >=ampere
+# float16: true
+
+# # A list of one or more datasets to finetune the model with
+# datasets:
+#   # HuggingFace dataset repo | s3://,gs:// path | "json" for local dataset, make sure to fill data_files
+#   - path: vicgalle/alpaca-gpt4
+#   # The type of prompt to use for training. [alpaca, sharegpt, gpteacher, oasst, reflection]
+#     type: alpaca # format | format:<prompt_style> (chat/instruct) | <prompt_strategies>.load_<load_fn>
+#     ds_type: # Optional[str] (json|arrow|parquet|text|csv) defines the datatype when path is a file
+#     data_files: # Optional[str] path to source data files
+#     shards: # Optional[int] number of shards to split data into
+#     name: # Optional[str] name of dataset configuration to load
+#     train_on_split: train # Optional[str] name of dataset split to load from
+
+#     # Optional[str] fastchat conversation type, only used with type: sharegpt
+#     conversation:  # Options (see Conversation 'name'): https://github.com/lm-sys/FastChat/blob/main/fastchat/conversation.py
+#     field_human: # Optional[str]. Human key to use for conversation.
+#     field_model: # Optional[str]. Assistant key to use for conversation.
+
+#   # Custom user prompt
+#   - path: repo
+#     type:
+#       # The below are defaults. only set what's needed.
+#       system_prompt: ""
+#       system_format: "{system}"
+#       field_system: system
+#       field_instruction: instruction
+#       field_input: input
+#       field_output: output
+
+#       # Customizable to be single line or multi-line
+#       # 'format' can include {input}
+#       format: |-
+#         User: {instruction} {input}
+#         Assistant:
+#       # 'no_input_format' cannot include {input}
+#       no_input_format: "{instruction} "
+
+#       # For `completion` datasets only, uses the provided field instead of `text` column
+#       field:
+
+# # Axolotl attempts to save the dataset as an arrow after packing the data together so
+# # subsequent training attempts load faster, relative path
+# dataset_prepared_path: data/last_run_prepared
+# # Push prepared dataset to hub
+# push_dataset_to_hub: # repo path
+# # The maximum number of processes to use while preprocessing your input dataset. This defaults to `os.cpu_count()`
+# # if not set.
+# dataset_num_proc: # defaults to os.cpu_count() if not set
+# # push checkpoints to hub
+# hub_model_id: # repo path to push finetuned model
+# # how to push checkpoints to hub
+# # https://huggingface.co/docs/transformers/v4.31.0/en/main_classes/trainer#transformers.TrainingArguments.hub_strategy
+# hub_strategy:
+# # Whether to use hf `use_auth_token` for loading datasets. Useful for fetching private datasets
+# # Required to be true when used in combination with `push_dataset_to_hub`
+# hf_use_auth_token: # boolean
+# # How much of the dataset to set aside as evaluation. 1 = 100%, 0.50 = 50%, etc. 0 for no eval.
+# val_set_size: 0.04
+# # Num shards for whole dataset
+# dataset_shard_num:
+# # Index of shard to use for whole dataset
+# dataset_shard_idx:
+
+# # The maximum length of an input to train with, this should typically be less than 2048
+# # as most models have a token/context limit of 2048
+# sequence_len: 2048
+# # Pad inputs so each step uses constant sized buffers
+# # This will reduce memory fragmentation and may prevent OOMs, by re-using memory more efficiently
+# pad_to_sequence_len:
+# # Max sequence length to concatenate training samples together up to
+# # Inspired by StackLLaMA. see https://huggingface.co/blog/stackllama#supervised-fine-tuning
+# # FutureWarning: This will soon be DEPRECATED
+# max_packed_sequence_len: 1024
+# # Use efficient multi-packing with block diagonal attention and per sequence position_ids. Recommend set to 'true'
+# sample_packing:
+# # Set to 'false' if getting errors during eval with sample_packing on.
+# eval_sample_packing:
+# # You can set these packing optimizations AFTER starting a training at least once.
+# # The trainer will provide recommended values for these values.
+# sample_packing_eff_est:
+# total_num_tokens:
+
+# # If you want to use 'lora' or 'qlora' or leave blank to train all parameters in original model
+# adapter: lora
+# # If you already have a lora model trained that you want to load, put that here.
+# # This means after training, if you want to test the model, you should set this to the value of `lora_out_dir`.
+# lora_model_dir:
+
+# # LoRA hyperparameters
+# # For more details about the following options, see:
+# # https://www.anyscale.com/blog/fine-tuning-llms-lora-or-full-parameter-an-in-depth-analysis-with-llama-2
+# lora_r: 8
+# lora_alpha: 16
+# lora_dropout: 0.05
+# lora_target_modules:
+#   - q_proj
+#   - v_proj
+# #  - k_proj
+# #  - o_proj
+# #  - gate_proj
+# #  - down_proj
+# #  - up_proj
+# lora_target_linear: # If true, will target all linear layers
+
+# # If you added new tokens to the tokenizer, you may need to save some LoRA modules because they need to know the new tokens.
+# # For LLaMA and Mistral, you need to save `embed_tokens` and `lm_head`. It may vary for other models.
+# # `embed_tokens` converts tokens to embeddings, and `lm_head` converts embeddings to token probabilities.
+# # https://github.com/huggingface/peft/issues/334#issuecomment-1561727994
+# lora_modules_to_save:
+# #  - embed_tokens
+# #  - lm_head
+
+# # Once you complete training, the model will be saved to the following directory.
+# # If you merge the adapter to the base model, a subdirectory `merged` will be created under this directory.
+# # Make sure `lora_model_dir` points to this directory if you want to use the trained model.
+# lora_out_dir:
+# lora_fan_in_fan_out: false
+
+# # ReLoRA configuration
+# # Must use either 'lora' or 'qlora' adapter, and does not support fsdp or deepspeed
+# relora_steps: # Number of steps per ReLoRA restart
+# relora_warmup_steps: # Number of per-restart warmup steps
+# relora_cpu_offload: # True to perform lora weight merges on cpu during restarts, for modest gpu memory savings
+
+# # wandb configuration if you're using it
+# wandb_mode: # "offline" to save run metadata locally and not sync to the server, "disabled" to turn off wandb
+# wandb_project: # Your wandb project name
+# wandb_entity: # A wandb Team name if using a Team
+# wandb_watch:
+# wandb_run_id: # Set the name of your wandb run
+# wandb_log_model: # "checkpoint" to log model to wandb Artifacts every `save_steps` or "end" to log only at the end of training
+
+# # Where to save the full-finetuned model to
+# output_dir: ./completed-model
+
+# # Whether to use torch.compile and which backend to use
+# torch_compile:  # bool
+# torch_compile_backend:  # Optional[str]
+
+# # Training hyperparameters
+
+# # If greater than 1, backpropagation will be skipped and the gradients will be accumulated for the given number of steps.
+# gradient_accumulation_steps: 1
+# # The number of samples to include in each batch. This is the number of samples sent to each GPU.
+# micro_batch_size: 2
+# eval_batch_size:
+# num_epochs: 4
+# warmup_steps: 100  # cannot use with warmup_ratio
+# warmup_ratio: 0.05  # cannot use with warmup_steps
+# learning_rate: 0.00003
+# lr_quadratic_warmup:
+# logging_steps:
+# save_strategy: # Set to `no` to skip checkpoint saves
+# save_steps: # Leave empty to save at each epoch
+# eval_steps: # Leave empty to eval at each epoch, integers for every N steps. decimal for fraction of total steps
+# save_total_limit: # Checkpoints saved at a time
+# # Maximum number of iterations to train for. It precedes num_epochs which means that
+# # if both are set, num_epochs will not be guaranteed.
+# # e.g., when 1 epoch is 1000 steps => `num_epochs: 2` and `max_steps: 100` will train for 100 steps
+# max_steps:
+
+# eval_table_size: # Approximate number of predictions sent to wandb depending on batch size. Enabled above 0. Default is 0
+# eval_table_max_new_tokens: # Total number of tokens generated for predictions sent to wandb. Default is 128
+
+# # Whether to mask out or include the human's prompt from the training labels
+# train_on_inputs: false
+# # Group similarly sized data to minimize padding.
+# # May be slower to start, as it must download and sort the entire dataset.
+# # Note that training loss may have an oscillating pattern with this enabled.
+# group_by_length: false
+
+# # Whether to use gradient checkpointing https://huggingface.co/docs/transformers/v4.18.0/en/performance#gradient-checkpointing
+# gradient_checkpointing: false
+
+# # Stop training after this many evaluation losses have increased in a row
+# # https://huggingface.co/transformers/v4.2.2/_modules/transformers/trainer_callback.html#EarlyStoppingCallback
+# early_stopping_patience: 3
+
+# # Specify a scheduler and kwargs to use with the optimizer
+# lr_scheduler: # 'one_cycle' | empty for cosine
+# lr_scheduler_kwargs:
+
+# # For one_cycle optim
+# lr_div_factor: # Learning rate div factor
+
+# # Specify optimizer
+# # Valid values are driven by the Transformers OptimizerNames class, see:
+# # https://github.com/huggingface/transformers/blob/95b374952dc27d8511541d6f5a4e22c9ec11fb24/src/transformers/training_args.py#L134
+# #
+# # Note that not all optimizers may be available in your environment, ex: 'adamw_anyprecision' is part of
+# # torchdistx, 'adamw_bnb_8bit' is part of bnb.optim.Adam8bit, etc. When in doubt, it is recommended to start with the optimizer used
+# # in the examples/ for your model and fine-tuning use case.
+# #
+# # Valid values for 'optimizer' include:
+# # - adamw_hf
+# # - adamw_torch
+# # - adamw_torch_fused
+# # - adamw_torch_xla
+# # - adamw_apex_fused
+# # - adafactor
+# # - adamw_anyprecision
+# # - sgd
+# # - adagrad
+# # - adamw_bnb_8bit
+# # - lion_8bit
+# # - lion_32bit
+# # - paged_adamw_32bit
+# # - paged_adamw_8bit
+# # - paged_lion_32bit
+# # - paged_lion_8bit
+# optimizer:
+# # Specify weight decay
+# weight_decay:
+# # adamw hyperparams
+# adam_beta1:
+# adam_beta2:
+# adam_epsilon:
+# # Gradient clipping max norm
+# max_grad_norm:
+
+# # Augmentation techniques
+# # NEFT https://arxiv.org/abs/2310.05914, set this to a number (paper default is 5) to add noise to embeddings
+# # currently only supported on Llama and Mistral
+# noisy_embedding_alpha:
+
+# # Whether to bettertransformers
+# flash_optimum:
+# # Whether to use xformers attention patch https://github.com/facebookresearch/xformers:
+# xformers_attention:
+# # Whether to use flash attention patch https://github.com/Dao-AILab/flash-attention:
+# flash_attention:
+# flash_attn_cross_entropy:  # Whether to use flash-attention cross entropy implementation - advanced use only
+# flash_attn_rms_norm:  # Whether to use flash-attention rms norm implementation - advanced use only
+# flash_attn_fuse_mlp: # Whether to fuse part of the MLP into a single operation
+# # Whether to use scaled-dot-product attention
+# # https://pytorch.org/docs/stable/generated/torch.nn.functional.scaled_dot_product_attention.html
+# sdp_attention:
+# # Landmark attention (only llama)
+# landmark_attention:
+# # xpos RoPE see https://github.com/kaiokendev/cutoff-len-is-context-len/blob/main/util/xpos_rope_llama_monkey_patch.py
+# # LLaMA only
+# xpos_rope:
+
+# # Resume from a specific checkpoint dir
+# resume_from_checkpoint:
+# # If resume_from_checkpoint isn't set and you simply want it to start where it left off.
+# # Be careful with this being turned on between different models.
+# auto_resume_from_checkpoints: false
+
+# # Don't mess with this, it's here for accelerate and torchrun
+# local_rank:
+
+# # Add or change special tokens.
+# # If you add tokens here, you don't need to add them to the `tokens` list.
+# special_tokens:
+#   # bos_token: "<s>"
+#   # eos_token: "</s>"
+#   # unk_token: "<unk>"
+
+# # Add extra tokens.
+# tokens:
+
+# # FSDP
+# fsdp:
+# fsdp_config:
+
+# # Deepspeed config path. e.g., deepspeed/zero3.json
+# deepspeed:
+
+# # Advanced DDP Arguments
+# ddp_timeout:
+# ddp_bucket_cap_mb:
+# ddp_broadcast_buffers:
+
+# # Path to torch distx for optim 'adamw_anyprecision'
+# torchdistx_path:
+
+# # Set to HF dataset for type: 'completion' for streaming instead of pre-tokenize
+# pretraining_dataset:
+
+# # Debug mode
+# debug:
+
+# # Seed
+# seed:
+
+# # Allow overwrite yml config using from cli
+# strict:
+
+base_model: ${BASE_MODEL}
+base_model_ignore_patterns: ${BASE_MODEL_IGNORE_PATTERNS}
+base_model_config: ${BASE_MODEL_CONFIG}
+revision_of_model: ${REVISION_OF_MODEL}
+tokenizer_config: ${TOKENIZER_CONFIG}
+model_type: ${MODEL_TYPE}
+tokenizer_type: ${TOKENIZER_TYPE}
+trust_remote_code: ${TRUST_REMOTE_CODE}
+tokenizer_use_fast: ${TOKENIZER_USE_FAST}
+tokenizer_legacy: ${TOKENIZER_LEGACY}
+resize_token_embeddings_to_32x: ${RESIZE_TOKEN_EMBEDDINGS_TO_32X}
+
+is_falcon_derived_model: ${IS_FALCON_DERIVED_MODEL}
+is_llama_derived_model: ${IS_LLAMA_DERIVED_MODEL}
+is_qwen_derived_model: ${IS_QWEN_DERIVED_MODEL}
+is_mistral_derived_model: ${IS_MISTRAL_DERIVED_MODEL}
+
+overrides_of_model_config:
+  rope_scaling:
+    type: ${ROPE_SCALING_TYPE}
+    factor: ${ROPE_SCALING_FACTOR}
+
+bnb_config_kwargs:
+  llm_int8_has_fp16_weight: ${BNB_LLM_INT8_HAS_FP16_WEIGHT}
+  bnb_4bit_quant_type: ${BNB_4BIT_QUANT_TYPE}
+  bnb_4bit_use_double_quant: ${BNB_4BIT_USE_DOUBLE_QUANT}
+
+gptq: ${GPTQ}
+load_in_8bit: ${LOAD_IN_8BIT}
+load_in_4bit: ${LOAD_IN_4BIT}
+bf16: ${BF16}
+fp16: ${FP16}
+tf32: ${TF32}
+bfloat16: ${BFLOAT16}
+float16: ${FLOAT16}
+
+gpu_memory_limit: ${GPU_MEMORY_LIMIT}
+lora_on_cpu: ${LORA_ON_CPU}
+
+datasets:
+  - path: ${DATASET_PATH}
+    type: ${DATASET_TYPE}
+    ds_type: ${DATASET_DS_TYPE}
+    data_files: ${DATASET_DATA_FILES}
+    shards: ${DATASET_SHARDS}
+    name: ${DATASET_NAME}
+    train_on_split: ${DATASET_TRAIN_ON_SPLIT}
+    revision: ${DATASET_REVISION}
+    trust_remote_code: ${DATASET_TRUST_REMOTE_CODE}
+
+rl: ${RL}
+dpo_use_weighting: ${DPO_USE_WEIGHTING}
+
+chat_template: ${CHAT_TEMPLATE}
+chat_template_jinja: ${CHAT_TEMPLATE_JINJA}
+default_system_message: ${DEFAULT_SYSTEM_MESSAGE}
+dataset_prepared_path: ${DATASET_PREPARED_PATH}
+push_dataset_to_hub: ${PUSH_DATASET_TO_HUB}
+dataset_num_proc: ${DATASET_NUM_PROC}
+dataset_keep_in_memory: ${DATASET_KEEP_IN_MEMORY}
+hub_model_id: ${HUB_MODEL_ID}
+hub_strategy: ${HUB_STRATEGY}
+hf_use_auth_token: ${HF_USE_AUTH_TOKEN}
+val_set_size: ${VAL_SET_SIZE}
+dataset_shard_num: ${DATASET_SHARD_NUM}
+dataset_shard_idx: ${DATASET_SHARD_IDX}
+
+sequence_len: ${SEQUENCE_LEN}
+pad_to_sequence_len: ${PAD_TO_SEQUENCE_LEN}
+sample_packing: ${SAMPLE_PACKING}
+eval_sample_packing: ${EVAL_SAMPLE_PACKING}
+sample_packing_eff_est: ${SAMPLE_PACKING_EFF_EST}
+total_num_tokens: ${TOTAL_NUM_TOKENS}
+sample_packing_group_size: ${SAMPLE_PACKING_GROUP_SIZE}
+sample_packing_bin_size: ${SAMPLE_PACKING_BIN_SIZE}
+
+batch_flattening: ${BATCH_FLATTENING}
+device_map: ${DEVICE_MAP}
+max_memory: ${MAX_MEMORY}
+
+adapter: ${ADAPTER}
+lora_model_dir: ${LORA_MODEL_DIR}
+
+lora_r: ${LORA_R}
+lora_alpha: ${LORA_ALPHA}
+lora_dropout: ${LORA_DROPOUT}
+lora_target_modules:
+  - ${LORA_TARGET_MODULES}
+lora_target_linear: ${LORA_TARGET_LINEAR}
+peft_layers_to_transform: ${PEFT_LAYERS_TO_TRANSFORM}
+lora_modules_to_save: ${LORA_MODULES_TO_SAVE}
+lora_fan_in_fan_out: ${LORA_FAN_IN_FAN_OUT}
+
+loraplus_lr_ratio: ${LORAPLUS_LR_RATIO}
+loraplus_lr_embedding: ${LORAPLUS_LR_EMBEDDING}
+
+peft:
+  loftq_config:
+    loftq_bits: ${LOFTQ_BITS}
+
+relora_steps: ${RELORA_STEPS}
+relora_warmup_steps: ${RELORA_WARMUP_STEPS}
+relora_anneal_steps: ${RELORA_ANNEAL_STEPS}
+relora_prune_ratio: ${RELORA_PRUNE_RATIO}
+relora_cpu_offload: ${RELORA_CPU_OFFLOAD}
+
+wandb_mode: ${WANDB_MODE}
+wandb_project: ${WANDB_PROJECT}
+wandb_entity: ${WANDB_ENTITY}
+wandb_watch: ${WANDB_WATCH}
+wandb_name: ${WANDB_NAME}
+wandb_run_id: ${WANDB_RUN_ID}
+wandb_log_model: ${WANDB_LOG_MODEL}
+
+mlflow_tracking_uri: ${MLFLOW_TRACKING_URI}
+mlflow_experiment_name: ${MLFLOW_EXPERIMENT_NAME}
+mlflow_run_name: ${MLFLOW_RUN_NAME}
+hf_mlflow_log_artifacts: ${HF_MLFLOW_LOG_ARTIFACTS}
+
+use_comet: ${USE_COMET}
+comet_api_key: ${COMET_API_KEY}
+comet_workspace: ${COMET_WORKSPACE}
+comet_project_name: ${COMET_PROJECT_NAME}
+comet_experiment_key: ${COMET_EXPERIMENT_KEY}
+comet_mode: ${COMET_MODE}
+comet_online: ${COMET_ONLINE}
+comet_experiment_config: ${COMET_EXPERIMENT_CONFIG}
+
+output_dir: ${OUTPUT_DIR}
+
+torch_compile: ${TORCH_COMPILE}
+torch_compile_backend: ${TORCH_COMPILE_BACKEND}
+
+gradient_accumulation_steps: ${GRADIENT_ACCUMULATION_STEPS}
+micro_batch_size: ${MICRO_BATCH_SIZE}
+eval_batch_size: ${EVAL_BATCH_SIZE}
+num_epochs: ${NUM_EPOCHS}
+warmup_steps: ${WARMUP_STEPS}
+warmup_ratio: ${WARMUP_RATIO}
+learning_rate: ${LEARNING_RATE}
+lr_quadratic_warmup: ${LR_QUADRATIC_WARMUP}
+logging_steps: ${LOGGING_STEPS}
+eval_steps: ${EVAL_STEPS}
+evals_per_epoch: ${EVALS_PER_EPOCH}
+save_strategy: ${SAVE_STRATEGY}
+save_steps: ${SAVE_STEPS}
+saves_per_epoch: ${SAVES_PER_EPOCH}
+save_total_limit: ${SAVE_TOTAL_LIMIT}
+max_steps: ${MAX_STEPS}
+
+eval_table_size: ${EVAL_TABLE_SIZE}
+eval_max_new_tokens: ${EVAL_MAX_NEW_TOKENS}
+eval_causal_lm_metrics: ${EVAL_CAUSAL_LM_METRICS}
+
+profiler_steps: ${PROFILER_STEPS}
+loss_watchdog_threshold: ${LOSS_WATCHDOG_THRESHOLD}
+loss_watchdog_patience: ${LOSS_WATCHDOG_PATIENCE}
+
+train_on_inputs: ${TRAIN_ON_INPUTS}
+group_by_length: ${GROUP_BY_LENGTH}
+gradient_checkpointing: ${GRADIENT_CHECKPOINTING}
+early_stopping_patience: ${EARLY_STOPPING_PATIENCE}
+
+lr_scheduler: ${LR_SCHEDULER}
+lr_scheduler_kwargs: ${LR_SCHEDULER_KWARGS}
+cosine_min_lr_ratio: ${COSINE_MIN_LR_RATIO}
+cosine_constant_lr_ratio: ${COSINE_CONSTANT_LR_RATIO}
+lr_div_factor: ${LR_DIV_FACTOR}
+
+optimizer: ${OPTIMIZER}
+optim_args: ${OPTIM_ARGS}
+optim_target_modules: ${OPTIM_TARGET_MODULES}
+weight_decay: ${WEIGHT_DECAY}
+adam_beta1: ${ADAM_BETA1}
+adam_beta2: ${ADAM_BETA2}
+adam_epsilon: ${ADAM_EPSILON}
+max_grad_norm: ${MAX_GRAD_NORM}
+
+neftune_noise_alpha: ${NEFTUNE_NOISE_ALPHA}
+
+flash_optimum: ${FLASH_OPTIMUM}
+xformers_attention: ${XFORMERS_ATTENTION}
+flash_attention: ${FLASH_ATTENTION}
+flash_attn_cross_entropy: ${FLASH_ATTN_CROSS_ENTROPY}
+flash_attn_rms_norm: ${FLASH_ATTN_RMS_NORM}
+flash_attn_fuse_mlp: ${FLASH_ATTN_FUSE_MLP}
+sdp_attention: ${SDP_ATTENTION}
+s2_attention: ${S2_ATTENTION}
+resume_from_checkpoint: ${RESUME_FROM_CHECKPOINT}
+auto_resume_from_checkpoints: ${AUTO_RESUME_FROM_CHECKPOINTS}
+
+local_rank: ${LOCAL_RANK}
+
+special_tokens:
+  bos_token: ${SPECIAL_TOKEN_BOS}
+  eos_token: ${SPECIAL_TOKEN_EOS}
+  unk_token: ${SPECIAL_TOKEN_UNK}
+  pad_token: ${SPECIAL_TOKEN_PAD}
+
+tokens: ${TOKENS}
+
+fsdp: ${FSDP}
+fsdp_config: ${FSDP_CONFIG}
+deepspeed: ${DEEPSPEED}
+
+ddp_timeout: ${DDP_TIMEOUT}
+ddp_bucket_cap_mb: ${DDP_BUCKET_CAP_MB}
+ddp_broadcast_buffers: ${DDP_BROADCAST_BUFFERS}
+
+torchdistx_path: ${TORCHDISTX_PATH}
+pretraining_dataset: ${PRETRAINING_DATASET}
+debug: ${DEBUG}
+seed: ${SEED}
+strict: ${STRICT}

.runpod/src/handler.py

@@ -0,0 +1,66 @@
+"""
+Runpod serverless entrypoint handler
+"""
+
+import os
+
+import runpod
+import yaml
+from huggingface_hub._login import login
+from train import train
+from utils import get_output_dir
+
+BASE_VOLUME = os.environ.get("BASE_VOLUME", "/runpod-volume")
+if not os.path.exists(BASE_VOLUME):
+    os.makedirs(BASE_VOLUME)
+
+logger = runpod.RunPodLogger()
+
+
+async def handler(job):
+    runpod_job_id = job["id"]
+    inputs = job["input"]
+    run_id = inputs.get("run_id", "default_run_id")
+    args = inputs.get("args", {})
+
+    # Set output directory
+    output_dir = os.path.join(BASE_VOLUME, get_output_dir(run_id))
+    args["output_dir"] = output_dir
+
+    # First save args to a temporary config file
+    config_path = "/workspace/test_config.yaml"
+
+    # Add run_name and job_id to args before saving
+    args["run_name"] = run_id
+    args["runpod_job_id"] = runpod_job_id
+
+    yaml_data = yaml.dump(args, default_flow_style=False)
+    with open(config_path, "w", encoding="utf-8") as file:
+        file.write(yaml_data)
+
+    # Handle credentials
+    credentials = inputs.get("credentials", {})
+
+    if "wandb_api_key" in credentials:
+        os.environ["WANDB_API_KEY"] = credentials["wandb_api_key"]
+    if "hf_token" in credentials:
+        os.environ["HF_TOKEN"] = credentials["hf_token"]
+
+    if os.environ.get("HF_TOKEN"):
+        login(token=os.environ["HF_TOKEN"])
+    else:
+        logger.info("No HF_TOKEN provided. Skipping login.")
+
+    logger.info("Starting Training.")
+    async for result in train(config_path):  # Pass the config path instead of args
+        logger.info(result)
+    logger.info("Training Complete.")
+
+    # Cleanup
+    if "WANDB_API_KEY" in os.environ:
+        del os.environ["WANDB_API_KEY"]
+    if "HF_TOKEN" in os.environ:
+        del os.environ["HF_TOKEN"]
+
+
+runpod.serverless.start({"handler": handler, "return_aggregate_stream": True})

.runpod/src/test_input.json

@@ -0,0 +1,61 @@
+{
+  "input": {
+    "user_id": "user",
+    "model_id": "llama-test",
+    "run_id": "llama-test",
+    "credentials": {
+      "wandb_api_key": "",
+      "hf_token": ""
+    },
+    "args": {
+      "base_model": "NousResearch/Meta-Llama-3-8B",
+      "model_type": "LlamaForCausalLM",
+      "tokenizer_type": "AutoTokenizer",
+      "load_in_8bit": true,
+      "load_in_4bit": false,
+      "strict": false,
+      "datasets": [
+        {
+          "path": "mhenrichsen/alpaca_2k_test",
+          "type": "alpaca"
+        }
+      ],
+      "val_set_size": 0.05,
+      "output_dir": "./outputs/lora-out",
+      "sequence_len": 4096,
+      "sample_packing": true,
+      "eval_sample_packing": false,
+      "pad_to_sequence_len": true,
+      "adapter": "lora",
+      "lora_r": 32,
+      "lora_alpha": 16,
+      "lora_dropout": 0.05,
+      "lora_target_linear": true,
+      "lora_modules_to_save": [
+        "embed_tokens",
+        "lm_head"
+      ],
+      "gradient_accumulation_steps": 4,
+      "micro_batch_size": 2,
+      "num_epochs": 1,
+      "optimizer": "adamw_bnb_8bit",
+      "lr_scheduler": "cosine",
+      "learning_rate": 0.0002,
+      "train_on_inputs": false,
+      "group_by_length": false,
+      "bf16": "auto",
+      "tf32": false,
+      "gradient_checkpointing": true,
+      "logging_steps": 1,
+      "flash_attention": true,
+      "warmup_steps": 1,
+      "evals_per_epoch": 1,
+      "eval_max_new_tokens": 128,
+      "saves_per_epoch": 1,
+      "weight_decay": 0.0,
+      "special_tokens": {
+        "pad_token": "<|end_of_text|>"
+      }
+    }
+  }
+}

.runpod/src/train.py

@@ -0,0 +1,45 @@
+"""
+Runpod train entrypoint
+"""
+
+import asyncio
+
+
+async def train(config_path: str, gpu_id: str = "0", preprocess: bool = True):
+    """
+    Run preprocessing (if enabled) and training with the given config file
+    :param config_path: Path to the YAML config file
+    :param gpu_id: GPU ID to use (default: "0")
+    :param preprocess: Whether to run preprocessing (default: True)
+
+    """
+    # First check if preprocessing is needed
+    if preprocess:
+        # Preprocess command
+        preprocess_cmd = (
+            f"CUDA_VISIBLE_DEVICES={gpu_id} axolotl preprocess {config_path}"
+        )
+        process = await asyncio.create_subprocess_shell(
+            preprocess_cmd,
+            stdout=asyncio.subprocess.PIPE,
+            stderr=asyncio.subprocess.STDOUT,
+        )
+
+        if process.stdout is not None:
+            async for line in process.stdout:
+                yield f"Preprocessing: {line.decode().strip()}"
+        await process.wait()
+        yield "Preprocessing completed."
+    else:
+        yield "Skipping preprocessing step."
+
+    # Training command
+    train_cmd = f"axolotl train {config_path}"
+    process = await asyncio.create_subprocess_shell(
+        train_cmd, stdout=asyncio.subprocess.PIPE, stderr=asyncio.subprocess.STDOUT
+    )
+
+    if process.stdout is not None:
+        async for line in process.stdout:
+            yield f"Training: {line.decode().strip()}"
+    await process.wait()

.runpod/src/utils.py

@@ -0,0 +1,89 @@
+"""
+Runpod launcher utils
+"""
+
+import os
+
+import yaml
+
+
+def get_output_dir(run_id):
+    path = f"fine-tuning/{run_id}"
+    return path
+
+
+def make_valid_config(input_args):
+    """
+    Creates and saves updated config file, returns the path to the new config
+    :param input_args: dict of input args
+    :return: str, path to the updated config file
+    """
+    # Load default config
+    with open("config/config.yaml", "r", encoding="utf-8") as fin:
+        all_args = yaml.safe_load(fin)
+
+    if not input_args:
+        print("No args provided, using defaults")
+    else:
+        all_args.update(input_args)
+
+    # Create updated config path
+    updated_config_path = "config/updated_config.yaml"
+
+    # Save updated config to new file
+    with open(updated_config_path, "w", encoding="utf-8") as f:
+        yaml.dump(all_args, f)
+
+    return updated_config_path
+
+
+def set_config_env_vars(args: dict):
+    """
+    Convert API arguments into environment variables.
+    Handles nested dictionaries, lists, and special values.
+
+    Args:
+        args (dict): The arguments dictionary from the API request
+    """
+
+    def process_value(value):
+        """Convert Python values to string format for environment variables"""
+        if value is None:
+            return ""
+        if isinstance(value, bool):
+            return str(value).lower()
+        if isinstance(value, (list, dict)):
+            return str(value)
+        return str(value)
+
+    def set_env_vars(data, prefix=""):
+        """Recursively set environment variables from nested dictionary"""
+        for key, value in data.items():
+            env_key = prefix + key.upper()
+
+            # Handle special cases
+            if isinstance(value, dict):
+                # For nested dictionaries (like special_tokens)
+                set_env_vars(value, f"{env_key}_")
+            elif isinstance(value, list):
+                # Handle list of dictionaries (like datasets)
+                if value and isinstance(value[0], dict):
+                    for i, item in enumerate(value):
+                        set_env_vars(item, f"{env_key}_{i}_")
+                else:
+                    # For simple lists (like lora_target_modules)
+                    os.environ[env_key] = process_value(value)
+            else:
+                # Handle all other cases
+                os.environ[env_key] = process_value(value)
+
+    # Clear any existing related environment variables
+    # This prevents old values from persisting
+    for key in list(os.environ.keys()):
+        if key.startswith(
+            ("BASE_MODEL", "MODEL_TYPE", "TOKENIZER_TYPE", "DATASET", "LORA_", "WANDB_")
+        ):
+            del os.environ[key]
+
+    # Set new environment variables
+    set_env_vars(args)

.runpod/test-input.json

@@ -0,0 +1,86 @@
+{
+  "input": {
+    "name": "quick_smoke_test_sft",
+    "user_id": "user",
+    "model_id": "llama-test",
+    "run_id": "llama-test",
+    "credentials": {
+      "wandb_api_key": "",
+      "hf_token": ""
+    },
+    "args": {
+      "base_model": "HuggingFaceTB/SmolLM2-135M",
+      "model_type": "AutoModelForCausalLM",
+      "tokenizer_type": "AutoTokenizer",
+      "load_in_4bit": true,
+      "strict": false,
+      "datasets": [
+        {
+          "path": "mhenrichsen/alpaca_2k_test",
+          "type": "alpaca",
+          "split": "train[:10%]"
+        }
+      ],
+      "val_set_size": 0.02,
+      "output_dir": "./outputs/lora-out",
+      "sequence_len": 4096,
+      "sample_packing": true,
+      "eval_sample_packing": false,
+      "pad_to_sequence_len": true,
+      "adapter": "qlora",
+      "lora_r": 32,
+      "lora_alpha": 64,
+      "lora_dropout": 0.05,
+      "lora_target_linear": true,
+      "lora_modules_to_save": [
+        "embed_tokens",
+        "lm_head"
+      ],
+      "gradient_accumulation_steps": 2,
+      "micro_batch_size": 1,
+      "num_epochs": 1,
+      "optimizer": "adamw_torch_fused",
+      "lr_scheduler": "cosine",
+      "learning_rate": 0.0002,
+      "train_on_inputs": false,
+      "group_by_length": false,
+      "bf16": "auto",
+      "tf32": true,
+      "gradient_checkpointing": true,
+      "logging_steps": 1,
+      "flash_attention": true,
+      "warmup_steps": 1,
+      "evals_per_epoch": 1,
+      "eval_max_new_tokens": 128,
+      "saves_per_epoch": 1,
+      "weight_decay": 0.0,
+      "special_tokens": {
+        "pad_token": "<|endoftext|>"
+      },
+      "max_steps": 20
+    },
+    "timeout": 100000
+  },
+  "config": {
+    "gpuTypeId": "NVIDIA GeForce RTX 4090",
+    "gpuCount": 1,
+    "containerDiskInGb": 200,
+    "env": [
+      {
+        "key": "TOKENIZER",
+        "value": ""
+      },
+      {
+        "key": "DISABLE_LOG_STATS",
+        "value": "true"
+      }
+    ],
+    "allowedCudaVersions": [
+      "12.8",
+      "12.7",
+      "12.6",
+      "12.5",
+      "12.4"
+    ]
+  }
+}

.runpod/tests.json

@@ -0,0 +1,90 @@
+{
+  "tests": [
+    {
+      "name": "quick_smoke_test_sft",
+      "input": {
+        "user_id": "user",
+        "model_id": "llama-test",
+        "run_id": "llama-test",
+        "credentials": {
+          "wandb_api_key": "",
+          "hf_token": ""
+        },
+        "args": {
+          "base_model": "HuggingFaceTB/SmolLM2-135M",
+          "model_type": "AutoModelForCausalLM",
+          "tokenizer_type": "AutoTokenizer",
+          "load_in_4bit": true,
+          "strict": false,
+          "datasets": [
+            {
+              "path": "mhenrichsen/alpaca_2k_test",
+              "type": "alpaca",
+              "split": "train[:10%]"
+            }
+          ],
+          "val_set_size": 0.02,
+          "output_dir": "./outputs/lora-out",
+          "sequence_len": 4096,
+          "sample_packing": true,
+          "eval_sample_packing": false,
+          "pad_to_sequence_len": true,
+          "adapter": "qlora",
+          "lora_r": 32,
+          "lora_alpha": 64,
+          "lora_dropout": 0.05,
+          "lora_target_linear": true,
+          "lora_modules_to_save": [
+            "embed_tokens",
+            "lm_head"
+          ],
+          "gradient_accumulation_steps": 2,
+          "micro_batch_size": 1,
+          "num_epochs": 1,
+          "optimizer": "adamw_torch_fused",
+          "lr_scheduler": "cosine",
+          "learning_rate": 0.0002,
+          "train_on_inputs": false,
+          "group_by_length": false,
+          "bf16": "auto",
+          "tf32": true,
+          "gradient_checkpointing": true,
+          "logging_steps": 1,
+          "flash_attention": true,
+          "warmup_steps": 1,
+          "evals_per_epoch": 1,
+          "eval_max_new_tokens": 128,
+          "saves_per_epoch": 1,
+          "weight_decay": 0.0,
+          "special_tokens": {
+            "pad_token": "<|endoftext|>"
+          },
+          "max_steps": 20
+        }
+      },
+      "timeout": 100000
+    }
+  ],
+  "config": {
+    "gpuTypeId": "NVIDIA GeForce RTX 4090",
+    "gpuCount": 1,
+    "containerDiskInGb": 200,
+    "env": [
+      {
+        "key": "TOKENIZER",
+        "value": ""
+      },
+      {
+        "key": "DISABLE_LOG_STATS",
+        "value": "true"
+      }
+    ],
+    "allowedCudaVersions": [
+      "12.8",
+      "12.7",
+      "12.6",
+      "12.5",
+      "12.4"
+    ]
+  }
+}

AGENTS.md

@@ -0,0 +1,99 @@
+# Axolotl
+
+Fine-tuning framework for LLMs. Config-driven: every training run is defined by a single YAML file.
+
+## Tech Stack
+
+Python, PyTorch, HuggingFace Transformers, TRL, PEFT (LoRA/QLoRA), DeepSpeed, FSDP, vLLM (for GRPO generation).
+
+## Commands
+
+```bash
+axolotl train config.yaml              # Train (single or multi-GPU, auto-detected)
+axolotl preprocess config.yaml         # Tokenize dataset and validate config
+axolotl preprocess config.yaml --debug # Inspect tokenized samples and label masking
+axolotl inference config.yaml          # Interactive inference
+axolotl merge-lora config.yaml         # Merge LoRA adapter into base model
+axolotl vllm-serve config.yaml         # Start vLLM server for GRPO/EBFT training
+axolotl fetch examples                 # Download example configs
+axolotl agent-docs                     # Show agent-optimized docs (bundled with pip package)
+axolotl agent-docs grpo                # Topic-specific agent reference
+axolotl config-schema                  # Dump config JSON schema
+```
+
+## Training Methods
+
+| Method | Config Key | When to Use |
+|--------|-----------|-------------|
+| SFT | *(default)* | Input-output pairs, instruction tuning |
+| DPO/IPO | `rl: dpo` / `rl: dpo, dpo_loss_type: ["ipo"]` | Paired preference data (chosen vs rejected) |
+| KTO | `rl: kto` | Unpaired binary preference labels |
+| ORPO | `rl: orpo` | Single-stage alignment, no ref model |
+| GRPO | `rl: grpo` | RL with verifiable reward functions (math, code) |
+| EBFT | `rl: ebft` | Feature-matching rewards from internal representations |
+
+Agent-specific references:
+- [docs/agents/sft.md](docs/agents/sft.md) — supervised fine-tuning
+- [docs/agents/preference_tuning.md](docs/agents/preference_tuning.md) — DPO, IPO, KTO, ORPO, SimPO
+- [docs/agents/grpo.md](docs/agents/grpo.md) — GRPO online RL with reward functions
+- [docs/agents/reward_modelling.md](docs/agents/reward_modelling.md) — outcome and process reward models
+- [docs/agents/pretraining.md](docs/agents/pretraining.md) — continual pretraining
+- [docs/agents/model_architectures.md](docs/agents/model_architectures.md) — model-specific quirks (Gemma4, Qwen3.5 MoE, etc.)
+- [docs/agents/new_model_support.md](docs/agents/new_model_support.md) — debugging and adding support for new model architectures
+
+## Config Pattern
+
+All training is config-driven. A YAML file specifies model, adapter, dataset(s), and hyperparameters:
+
+```yaml
+base_model: meta-llama/Llama-3.1-8B-Instruct
+adapter: lora                    # or qlora, or omit for full fine-tune
+datasets:
+  - path: my_dataset
+    type: chat_template          # prompt strategy (see docs/dataset-formats/)
+output_dir: ./outputs/lora-out
+```
+
+Config schema: `src/axolotl/utils/schemas/config.py` (AxolotlInputConfig).
+
+## Project Structure
+
+```
+src/axolotl/
+  cli/                           # CLI entry points (train, preprocess, inference, merge_lora, vllm_serve)
+  core/
+    builders/                    # TrainerBuilder classes (causal.py for SFT, rl.py for RLHF)
+    trainers/                    # Trainer classes, mixins (optimizer, scheduler, packing)
+      dpo/                       # DPO trainer and config
+      grpo/                      # GRPO trainer and sampler
+  loaders/                       # Model, tokenizer, adapter, processor loading
+  prompt_strategies/             # Dataset format handlers (chat_template, alpaca, dpo/, kto/, orpo/)
+  utils/schemas/                 # Pydantic config schemas (config, model, training, peft, trl, fsdp)
+  integrations/                  # Plugins (liger, cut_cross_entropy, swanlab, nemo_gym)
+  monkeypatch/                   # Runtime patches for HF transformers
+
+examples/                        # Example YAML configs by model (llama-3/, qwen2/, mistral/, ebft/)
+deepspeed_configs/               # DeepSpeed JSON configs (zero2, zero3)
+docs/                            # Quarto documentation site
+```
+
+## Code Conventions
+
+- Config-driven: features are toggled via YAML, not code changes
+- Prompt strategies: `src/axolotl/prompt_strategies/` — each `type:` value maps to a function
+- Plugin system: `plugins:` list in config loads integration modules
+- Trainer mixins: `core/trainers/mixins/` for composable trainer behaviors
+- Schemas: all config validation via Pydantic in `utils/schemas/`
+
+## Key Documentation
+
+- [Getting Started](docs/getting-started.qmd) — quickstart tutorial
+- [Choosing a Method](docs/choosing_method.qmd) — SFT vs DPO vs GRPO decision guide
+- [Config Reference](docs/config-reference.qmd) — all config options
+- [Dataset Formats](docs/dataset-formats/) — chat_template, alpaca, input_output, completion
+- [RLHF](docs/rlhf.qmd) — DPO, KTO, ORPO, GRPO, EBFT configs and dataset formats
+- [GRPO Deep Dive](docs/grpo.qmd) — async training, custom rewards, scaling
+- [vLLM Serving](docs/vllm_serving.qmd) — vLLM setup for GRPO/EBFT
+- [Multi-GPU](docs/multi-gpu.qmd) — FSDP and DeepSpeed
+- [Training Stability](docs/training_stability.qmd) — debugging loss, NaN, OOM
+- [Debugging](docs/debugging.qmd) — VSCode setup, Docker debugging

CITATION.cff

@@ -0,0 +1,10 @@
+cff-version: 1.2.0
+type: software
+title: "Axolotl: Open Source LLM Post-Training"
+message: "If you use this software, please cite it as below."
+authors:
+  - name: "Axolotl maintainers and contributors"
+repository-code: "https://github.com/axolotl-ai-cloud/axolotl"
+url: "https://axolotl.ai/"
+license: Apache-2.0
+date-released: "2023-05-30"

CNAME

@@ -0,0 +1 @@
+docs.axolotl.ai

MANIFEST.in

@@ -1,5 +1,7 @@
-include requirements.txt
 include README.md
 include LICENSE
-include src/setuptools_axolotl_dynamic_dependencies.py
+include VERSION
+include src/axolotl/utils/chat_templates/templates/*.jinja
+include AGENTS.md
+recursive-include docs/agents *.md
 recursive-include axolotl *.py

README.md

@@ -5,10 +5,14 @@
         <img alt="Axolotl" src="https://raw.githubusercontent.com/axolotl-ai-cloud/axolotl/887513285d98132142bf5db2a74eb5e0928787f1/image/axolotl_logo_digital_black.svg" width="400" height="104" style="max-width: 100%;">
     </picture>
 </p>
+  <p align="center">
+      <strong>A Free and Open Source LLM Fine-tuning Framework</strong><br>
+  </p>
 
 <p align="center">
     <img src="https://img.shields.io/github/license/axolotl-ai-cloud/axolotl.svg?color=blue" alt="GitHub License">
     <img src="https://github.com/axolotl-ai-cloud/axolotl/actions/workflows/tests.yml/badge.svg" alt="tests">
+    <a href="https://codecov.io/gh/axolotl-ai-cloud/axolotl"><img src="https://codecov.io/gh/axolotl-ai-cloud/axolotl/branch/main/graph/badge.svg" alt="codecov"></a>
     <a href="https://github.com/axolotl-ai-cloud/axolotl/releases"><img src="https://img.shields.io/github/release/axolotl-ai-cloud/axolotl.svg" alt="Releases"></a>
     <br/>
     <a href="https://github.com/axolotl-ai-cloud/axolotl/graphs/contributors"><img src="https://img.shields.io/github/contributors-anon/axolotl-ai-cloud/axolotl?color=yellow&style=flat-square" alt="contributors" style="height: 20px;"></a>
@@ -16,53 +20,125 @@
     <br/>
     <a href="https://discord.com/invite/HhrNrHJPRb"><img src="https://img.shields.io/badge/discord-7289da.svg?style=flat-square&logo=discord" alt="discord" style="height: 20px;"></a>
     <a href="https://twitter.com/axolotl_ai"><img src="https://img.shields.io/twitter/follow/axolotl_ai?style=social" alt="twitter" style="height: 20px;"></a>
+    <a href="https://colab.research.google.com/github/axolotl-ai-cloud/axolotl/blob/main/examples/colab-notebooks/colab-axolotl-example.ipynb"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="google-colab" style="height: 20px;"></a>
     <br/>
     <img src="https://github.com/axolotl-ai-cloud/axolotl/actions/workflows/tests-nightly.yml/badge.svg" alt="tests-nightly">
     <img src="https://github.com/axolotl-ai-cloud/axolotl/actions/workflows/multi-gpu-e2e.yml/badge.svg" alt="multigpu-semi-weekly tests">
 </p>
 
-Axolotl is a tool designed to streamline post-training for various AI models.
-Post-training refers to any modifications or additional training performed on
-pre-trained models - including full model fine-tuning, parameter-efficient tuning (like
-LoRA and QLoRA), supervised fine-tuning (SFT), instruction tuning, and alignment
-techniques. With support for multiple model architectures and training configurations,
-Axolotl makes it easy to get started with these techniques.
 
-Axolotl is designed to work with YAML config files that contain everything you need to
-preprocess a dataset, train or fine-tune a model, run model inference or evaluation,
-and much more.
+## 🎉 Latest Updates
+
+- 2026/04:
+  - New model support has been added in Axolotl for [Mistral Medium 3.5](https://github.com/axolotl-ai-cloud/axolotl/tree/main/examples/mistral-medium-3_5) and [Gemma 4](https://github.com/axolotl-ai-cloud/axolotl/tree/main/examples/gemma4).
+  - Axolotl is now [uv-first](https://github.com/axolotl-ai-cloud/axolotl/pull/3545) and has [SonicMoE fused LoRA](https://github.com/axolotl-ai-cloud/axolotl/pull/3519) support.
+- 2026/03:
+  - New model support has been added in Axolotl for [Mistral Small 4](https://github.com/axolotl-ai-cloud/axolotl/tree/main/examples/mistral4), [Qwen3.5, Qwen3.5 MoE](https://github.com/axolotl-ai-cloud/axolotl/tree/main/examples/qwen3.5), [GLM-4.7-Flash](https://github.com/axolotl-ai-cloud/axolotl/tree/main/examples/glm47-flash), [GLM-4.6V](https://github.com/axolotl-ai-cloud/axolotl/tree/main/examples/glm46v), and [GLM-4.5-Air](https://github.com/axolotl-ai-cloud/axolotl/tree/main/examples/glm45).
+  - [MoE expert quantization](https://docs.axolotl.ai/docs/expert_quantization.html) support (via `quantize_moe_experts: true`) greatly reduces VRAM when training MoE models (FSDP2 compat).
+- 2026/02:
+  - [ScatterMoE LoRA](https://github.com/axolotl-ai-cloud/axolotl/pull/3410) support. LoRA fine-tuning directly on MoE expert weights using custom Triton kernels.
+  - Axolotl now has support for [SageAttention](https://github.com/axolotl-ai-cloud/axolotl/pull/2823) and [GDPO](https://github.com/axolotl-ai-cloud/axolotl/pull/3353) (Generalized DPO).
+- 2026/01:
+  - New integration for [EAFT](https://github.com/axolotl-ai-cloud/axolotl/pull/3366) (Entropy-Aware Focal Training), weights loss by entropy of the top-k logit distribution, and [Scalable Softmax](https://github.com/axolotl-ai-cloud/axolotl/pull/3338), improves long context in attention.
+- 2025/12:
+  - Axolotl now includes support for [Kimi-Linear](https://docs.axolotl.ai/docs/models/kimi-linear.html), [Plano-Orchestrator](https://docs.axolotl.ai/docs/models/plano.html), [MiMo](https://docs.axolotl.ai/docs/models/mimo.html), [InternVL 3.5](https://docs.axolotl.ai/docs/models/internvl3_5.html), [Olmo3](https://docs.axolotl.ai/docs/models/olmo3.html), [Trinity](https://docs.axolotl.ai/docs/models/trinity.html), and [Ministral3](https://docs.axolotl.ai/docs/models/ministral3.html).
+  - [Distributed Muon Optimizer](https://github.com/axolotl-ai-cloud/axolotl/pull/3264) support has been added for FSDP2 pretraining.
+- 2025/10: New model support has been added in Axolotl for: [Qwen3 Next](https://docs.axolotl.ai/docs/models/qwen3-next.html), [Qwen2.5-vl, Qwen3-vl](https://github.com/axolotl-ai-cloud/axolotl/tree/main/examples/qwen2_5-vl), [Qwen3, Qwen3MoE](https://docs.axolotl.ai/docs/models/qwen3.html), [Granite 4](https://docs.axolotl.ai/docs/models/granite4.html), [HunYuan](https://docs.axolotl.ai/docs/models/hunyuan.html), [Magistral 2509](https://docs.axolotl.ai/docs/models/magistral/vision.html), [Apertus](https://docs.axolotl.ai/docs/models/apertus.html), and [Seed-OSS](https://docs.axolotl.ai/docs/models/seed-oss.html).
+
+<details>
+
+<summary>Expand older updates</summary>
+
+- 2025/09: Axolotl now has text diffusion training. Read more [here](https://github.com/axolotl-ai-cloud/axolotl/tree/main/src/axolotl/integrations/diffusion).
+- 2025/08: QAT has been updated to include NVFP4 support. See [PR](https://github.com/axolotl-ai-cloud/axolotl/pull/3107).
+- 2025/07:
+  - ND Parallelism support has been added into Axolotl. Compose Context Parallelism (CP), Tensor Parallelism (TP), and Fully Sharded Data Parallelism (FSDP) within a single node and across multiple nodes. Check out the [blog post](https://huggingface.co/blog/accelerate-nd-parallel) for more info.
+  - Axolotl adds more models: [GPT-OSS](https://docs.axolotl.ai/docs/models/gpt-oss.html), [Gemma 3n](https://docs.axolotl.ai/docs/models/gemma3n.html), [Liquid Foundation Model 2 (LFM2)](https://docs.axolotl.ai/docs/models/LiquidAI.html), and [Arcee Foundation Models (AFM)](https://docs.axolotl.ai/docs/models/arcee.html).
+  - FP8 finetuning with fp8 gather op is now possible in Axolotl via `torchao`. Get started [here](https://docs.axolotl.ai/docs/mixed_precision.html#sec-fp8)!
+  - [Voxtral](https://docs.axolotl.ai/docs/models/voxtral.html), [Magistral 1.1](https://docs.axolotl.ai/docs/models/magistral.html), and [Devstral](https://docs.axolotl.ai/docs/models/devstral.html) with mistral-common tokenizer support has been integrated in Axolotl!
+  - TiledMLP support for single-GPU to multi-GPU training with DDP, DeepSpeed and FSDP support has been added to support Arctic Long Sequence Training. (ALST). See [examples](https://github.com/axolotl-ai-cloud/axolotl/tree/main/examples/alst) for using ALST with Axolotl!
+- 2025/06: Magistral with mistral-common tokenizer support has been added to Axolotl. See [docs](https://docs.axolotl.ai/docs/models/magistral.html) to start training your own Magistral models with Axolotl!
+- 2025/05: Quantization Aware Training (QAT) support has been added to Axolotl. Explore the [docs](https://docs.axolotl.ai/docs/qat.html) to learn more!
+- 2025/04: Llama 4 support has been added in Axolotl. See [docs](https://docs.axolotl.ai/docs/models/llama-4.html) to start training your own Llama 4 models with Axolotl's linearized version!
+- 2025/03: Axolotl has implemented Sequence Parallelism (SP) support. Read the [blog](https://huggingface.co/blog/axolotl-ai-co/long-context-with-sequence-parallelism-in-axolotl) and [docs](https://docs.axolotl.ai/docs/sequence_parallelism.html) to learn how to scale your context length when fine-tuning.
+- 2025/03: (Beta) Fine-tuning Multimodal models is now supported in Axolotl. Check out the [docs](https://docs.axolotl.ai/docs/multimodal.html) to fine-tune your own!
+- 2025/02: Axolotl has added LoRA optimizations to reduce memory usage and improve training speed for LoRA and QLoRA in single GPU and multi-GPU training (DDP and DeepSpeed). Jump into the [docs](https://docs.axolotl.ai/docs/lora_optims.html) to give it a try.
+- 2025/02: Axolotl has added GRPO support. Dive into our [blog](https://huggingface.co/blog/axolotl-ai-co/training-llms-w-interpreter-feedback-wasm) and [GRPO example](https://github.com/axolotl-ai-cloud/grpo_code) and have some fun!
+- 2025/01: Axolotl has added Reward Modelling / Process Reward Modelling fine-tuning support. See [docs](https://docs.axolotl.ai/docs/reward_modelling.html).
+
+</details>
+
+## ✨ Overview
+
+Axolotl is a free and open-source tool designed to streamline post-training and fine-tuning for the latest large language models (LLMs).
 
 Features:
 
-- Train various Huggingface models such as llama, pythia, falcon, mpt
-- Supports fullfinetune, lora, qlora, relora, and gptq
-- Customize configurations using a simple yaml file or CLI overwrite
-- Load different dataset formats, use custom formats, or bring your own tokenized datasets
-- Integrated with [xformers](https://github.com/facebookresearch/xformers), flash attention, [liger kernel](https://github.com/linkedin/Liger-Kernel), rope scaling, and multipacking
-- Works with single GPU or multiple GPUs via FSDP or Deepspeed
-- Easily run with Docker locally or on the cloud
-- Log results and optionally checkpoints to wandb, mlflow or Comet
-- And more!
+- **Multiple Model Support**: Train various models like GPT-OSS, LLaMA, Mistral, Mixtral, Pythia, and many more models available on the Hugging Face Hub.
+- **Multimodal Training**: Fine-tune vision-language models (VLMs) including LLaMA-Vision, Qwen2-VL, Pixtral, LLaVA, SmolVLM2, GLM-4.6V, InternVL 3.5, Gemma 3n, and audio models like Voxtral with image, video, and audio support.
+- **Training Methods**: Full fine-tuning, LoRA, QLoRA, GPTQ, QAT, Preference Tuning (DPO, IPO, KTO, ORPO), RL (GRPO, GDPO), and Reward Modelling (RM) / Process Reward Modelling (PRM).
+- **Easy Configuration**: Re-use a single YAML configuration file across the full fine-tuning pipeline: dataset preprocessing, training, evaluation, quantization, and inference.
+- **Performance Optimizations**: [Multipacking](https://docs.axolotl.ai/docs/multipack.html), [Flash Attention 2/3/4](https://docs.axolotl.ai/docs/attention.html#flash-attention), [Xformers](https://docs.axolotl.ai/docs/attention.html#xformers), [Flex Attention](https://docs.axolotl.ai/docs/attention.html#flex-attention), [SageAttention](https://docs.axolotl.ai/docs/attention.html#sageattention), [Liger Kernel](https://docs.axolotl.ai/docs/custom_integrations.html#liger-kernels), [Cut Cross Entropy](https://docs.axolotl.ai/docs/custom_integrations.html#cut-cross-entropy), [ScatterMoE](https://docs.axolotl.ai/docs/custom_integrations.html#kernels-integration), [Sequence Parallelism (SP)](https://docs.axolotl.ai/docs/sequence_parallelism.html), [LoRA optimizations](https://docs.axolotl.ai/docs/lora_optims.html), [Multi-GPU training (FSDP1, FSDP2, DeepSpeed)](https://docs.axolotl.ai/docs/multi-gpu.html), [Multi-node training (Torchrun, Ray)](https://docs.axolotl.ai/docs/multi-node.html), and many more!
+- **Flexible Dataset Handling**: Load from local, HuggingFace, and cloud (S3, Azure, GCP, OCI) datasets.
+- **Cloud Ready**: We ship [Docker images](https://hub.docker.com/u/axolotlai) and also [PyPI packages](https://pypi.org/project/axolotl/) for use on cloud platforms and local hardware.
 
-## 🚀 Quick Start
+
+
+## 🚀 Quick Start - LLM Fine-tuning in Minutes
 
 **Requirements**:
 
 - NVIDIA GPU (Ampere or newer for `bf16` and Flash Attention) or AMD GPU
-- Python 3.11
-- PyTorch ≥2.4.1
+- Python >=3.11 (3.12 recommended)
+- PyTorch ≥2.9.1
+
+### Google Colab
+
+[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/axolotl-ai-cloud/axolotl/blob/main/examples/colab-notebooks/colab-axolotl-example.ipynb#scrollTo=msOCO4NRmRLa)
 
 ### Installation
 
 ```bash
-pip3 install --no-build-isolation axolotl[flash-attn,deepspeed]
+# install uv if you don't already have it installed (restart shell after)
+curl -LsSf https://astral.sh/uv/install.sh | sh
+
+# change depending on system
+export UV_TORCH_BACKEND=cu128
+
+# create a new virtual environment
+uv venv --python 3.12
+source .venv/bin/activate
+
+uv pip install torch==2.10.0 torchvision
+uv pip install --no-build-isolation axolotl[deepspeed]
 
 # Download example axolotl configs, deepspeed configs
 axolotl fetch examples
 axolotl fetch deepspeed_configs  # OPTIONAL
 ```
 
-Other installation approaches are described [here](https://axolotl-ai-cloud.github.io/axolotl/docs/installation.html).
+#### Using Docker
+
+Installing with Docker can be less error prone than installing in your own environment.
+```bash
+docker run --gpus '"all"' --ipc=host --rm -it axolotlai/axolotl:main-latest
+```
+
+Other installation approaches are described [here](https://docs.axolotl.ai/docs/installation.html).
+
+#### Cloud Providers
+
+<details>
+
+- [RunPod](https://runpod.io/gsc?template=v2ickqhz9s&ref=6i7fkpdz)
+- [Vast.ai](https://cloud.vast.ai?ref_id=62897&template_id=bdd4a49fa8bce926defc99471864cace&utm_source=github&utm_medium=developer_community&utm_campaign=template_launch_axolotl&utm_content=readme)
+- [PRIME Intellect](https://app.primeintellect.ai/dashboard/create-cluster?image=axolotl&location=Cheapest&security=Cheapest&show_spot=true)
+- [Modal](https://www.modal.com?utm_source=github&utm_medium=github&utm_campaign=axolotl)
+- [Novita](https://novita.ai/gpus-console?templateId=311)
+- [JarvisLabs.ai](https://jarvislabs.ai/templates/axolotl)
+- [Latitude.sh](https://latitude.sh/blueprint/989e0e79-3bf6-41ea-a46b-1f246e309d5c)
+
+</details>
 
 ### Your First Fine-tune
 
@@ -77,73 +153,80 @@ axolotl fetch examples --dest path/to/folder
 axolotl train examples/llama-3/lora-1b.yml
 ```
 
-That's it! Check out our [Getting Started Guide](https://axolotl-ai-cloud.github.io/axolotl/docs/getting-started.html) for a more detailed walkthrough.
+That's it! Check out our [Getting Started Guide](https://docs.axolotl.ai/docs/getting-started.html) for a more detailed walkthrough.
 
-## ✨ Key Features
-
-- **Multiple Model Support**: Train various models like LLaMA, Mistral, Mixtral, Pythia, and more
-- **Training Methods**: Full fine-tuning, LoRA, QLoRA, and more
-- **Easy Configuration**: Simple YAML files to control your training setup
-- **Performance Optimizations**: Flash Attention, xformers, multi-GPU training
-- **Flexible Dataset Handling**: Use various formats and custom datasets
-- **Cloud Ready**: Run on cloud platforms or local hardware
 
 ## 📚 Documentation
 
-- [Installation Options](https://axolotl-ai-cloud.github.io/axolotl/docs/installation.html) - Detailed setup instructions for different environments
-- [Configuration Guide](https://axolotl-ai-cloud.github.io/axolotl/docs/config.html) - Full configuration options and examples
-- [Dataset Guide](https://axolotl-ai-cloud.github.io/axolotl/docs/dataset-formats/) - Supported formats and how to use them
-- [Multi-GPU Training](https://axolotl-ai-cloud.github.io/axolotl/docs/multi-gpu.html)
-- [Multi-Node Training](https://axolotl-ai-cloud.github.io/axolotl/docs/multi-node.html)
-- [Multipacking](https://axolotl-ai-cloud.github.io/axolotl/docs/multipack.html)
-- [FAQ](https://axolotl-ai-cloud.github.io/axolotl/docs/faq.html) - Frequently asked questions
+- [Installation Options](https://docs.axolotl.ai/docs/installation.html) - Detailed setup instructions for different environments
+- [Configuration Guide](https://docs.axolotl.ai/docs/config-reference.html) - Full configuration options and examples
+- [Dataset Loading](https://docs.axolotl.ai/docs/dataset_loading.html) - Loading datasets from various sources
+- [Dataset Guide](https://docs.axolotl.ai/docs/dataset-formats/) - Supported formats and how to use them
+- [Multi-GPU Training](https://docs.axolotl.ai/docs/multi-gpu.html)
+- [Multi-Node Training](https://docs.axolotl.ai/docs/multi-node.html)
+- [Multipacking](https://docs.axolotl.ai/docs/multipack.html)
+- [API Reference](https://docs.axolotl.ai/docs/api/) - Auto-generated code documentation
+- [FAQ](https://docs.axolotl.ai/docs/faq.html) - Frequently asked questions
+
+## AI Agent Support
+
+Axolotl ships with built-in documentation optimized for AI coding agents (Claude Code, Cursor, Copilot, etc.). These docs are bundled with the pip package — no repo clone needed.
+
+```bash
+# Show overview and available training methods
+axolotl agent-docs
+
+# Topic-specific references
+axolotl agent-docs sft                 # supervised fine-tuning
+axolotl agent-docs grpo                # GRPO online RL
+axolotl agent-docs preference_tuning   # DPO, KTO, ORPO, SimPO
+axolotl agent-docs reward_modelling    # outcome and process reward models
+axolotl agent-docs pretraining         # continual pretraining
+axolotl agent-docs --list              # list all topics
+
+# Dump config schema for programmatic use
+axolotl config-schema
+axolotl config-schema --field adapter
+```
+
+If you're working with the source repo, agent docs are also available at `docs/agents/` and the project overview is in `AGENTS.md`.
 
 ## 🤝 Getting Help
 
 - Join our [Discord community](https://discord.gg/HhrNrHJPRb) for support
 - Check out our [Examples](https://github.com/axolotl-ai-cloud/axolotl/tree/main/examples/) directory
-- Read our [Debugging Guide](https://axolotl-ai-cloud.github.io/axolotl/docs/debugging.html)
+- Read our [Debugging Guide](https://docs.axolotl.ai/docs/debugging.html)
 - Need dedicated support? Please contact [✉️wing@axolotl.ai](mailto:wing@axolotl.ai) for options
 
 ## 🌟 Contributing
 
 Contributions are welcome! Please see our [Contributing Guide](https://github.com/axolotl-ai-cloud/axolotl/blob/main/.github/CONTRIBUTING.md) for details.
 
-## Supported Models
+## 📈 Telemetry
 
-|             | fp16/fp32 | lora | qlora | gptq | gptq w/flash attn | flash attn | xformers attn |
-|-------------|:----------|:-----|-------|------|-------------------|------------|--------------|
-| llama       | ✅         | ✅    | ✅     | ✅             | ✅                 | ✅          | ✅            |
-| Mistral     | ✅         | ✅    | ✅     | ✅             | ✅                 | ✅          | ✅            |
-| Mixtral-MoE | ✅         | ✅    | ✅     | ❓             | ❓                 | ❓          | ❓            |
-| Mixtral8X22 | ✅         | ✅    | ✅     | ❓             | ❓                 | ❓          | ❓            |
-| Pythia      | ✅         | ✅    | ✅     | ❌             | ❌                 | ❌          | ❓            |
-| cerebras    | ✅         | ✅    | ✅     | ❌             | ❌                 | ❌          | ❓            |
-| btlm        | ✅         | ✅    | ✅     | ❌             | ❌                 | ❌          | ❓            |
-| mpt         | ✅         | ❌    | ❓     | ❌             | ❌                 | ❌          | ❓            |
-| falcon      | ✅         | ✅    | ✅     | ❌             | ❌                 | ❌          | ❓            |
-| gpt-j       | ✅         | ✅    | ✅     | ❌             | ❌                 | ❓          | ❓            |
-| XGen        | ✅         | ❓    | ✅     | ❓             | ❓                 | ❓          | ✅            |
-| phi         | ✅         | ✅    | ✅     | ❓             | ❓                 | ❓          | ❓            |
-| RWKV        | ✅         | ❓    | ❓     | ❓             | ❓                 | ❓          | ❓            |
-| Qwen        | ✅         | ✅    | ✅     | ❓             | ❓                 | ❓          | ❓            |
-| Gemma       | ✅         | ✅    | ✅     | ❓             | ❓                 | ✅          | ❓            |
-| Jamba       | ✅         | ✅    | ✅     | ❓             | ❓                 | ✅          | ❓            |
-
-✅: supported
-❌: not supported
-❓: untested
+Axolotl has opt-out telemetry that helps us understand how the project is being used
+and prioritize improvements. We collect basic system information, model types, and
+error rates—never personal data or file paths. Telemetry is enabled by default. To
+disable it, set AXOLOTL_DO_NOT_TRACK=1. For more details, see our [telemetry documentation](https://docs.axolotl.ai/docs/telemetry.html).
 
 ## ❤️ Sponsors
 
-Thank you to our sponsors who help make Axolotl possible:
-
-- [Modal](https://www.modal.com?utm_source=github&utm_medium=github&utm_campaign=axolotl) - Modal lets you run
-jobs in the cloud, by just writing a few lines of Python. Customers use Modal to deploy Gen AI models at large scale,
-fine-tune large language models, run protein folding simulations, and much more.
-
 Interested in sponsoring? Contact us at [wing@axolotl.ai](mailto:wing@axolotl.ai)
 
+## 📝 Citing Axolotl
+
+If you use Axolotl in your research or projects, please cite it as follows:
+
+```bibtex
+@software{axolotl,
+  title = {Axolotl: Open Source LLM Post-Training},
+  author = {{Axolotl maintainers and contributors}},
+  url = {https://github.com/axolotl-ai-cloud/axolotl},
+  license = {Apache-2.0},
+  year = {2023}
+}
+```
+
 ## 📜 License
 
 This project is licensed under the Apache 2.0 License - see the [LICENSE](LICENSE) file for details.

TODO.md

@@ -1,10 +0,0 @@
-# todo list
-
-- [] Validation of parameters for combinations that won't work
-
-
-
-## things that are known not to work
-
-- FSDP offload and gradient_checkpointing - https://github.com/pytorch/pytorch/issues/82203
-- adamw_bnb_8bit doesn't play well with FSDP offload

VERSION

@@ -0,0 +1 @@
+0.16.2.dev0

_quarto.yml

@@ -1,11 +1,217 @@
 project:
   type: website
+  pre-render:
+   - docs/scripts/generate_config_docs.py
+   - docs/scripts/generate_examples_docs.py
 
+quartodoc:
+  dir: docs/api
+  package: axolotl
+  title: API Reference
+  parser: google
+
+  sections:
+    - title: Core
+      desc: Core functionality for training
+      contents:
+        - train
+        - evaluate
+        - datasets
+        - convert
+        - prompt_tokenizers
+        - logging_config
+        - core.builders.base
+        - core.builders.causal
+        - core.builders.rl
+        - core.training_args
+        - core.chat.messages
+        - core.chat.format.chatml
+        - core.chat.format.llama3x
+        - core.chat.format.shared
+        - core.datasets.chat
+        - core.datasets.transforms.chat_builder
+    - title: CLI
+      desc: Command-line interface
+      contents:
+        - cli.main
+        - cli.train
+        - cli.evaluate
+        - cli.args
+        - cli.art
+        - cli.checks
+        - cli.config
+        - cli.delinearize_llama4
+        - cli.inference
+        - cli.merge_lora
+        - cli.merge_sharded_fsdp_weights
+        - cli.preprocess
+        - cli.quantize
+        - cli.vllm_serve
+        - cli.cloud.base
+        - cli.cloud.modal_
+        - cli.utils
+        - cli.utils.args
+        - cli.utils.fetch
+        - cli.utils.load
+        - cli.utils.sweeps
+        - cli.utils.train
+    - title: Trainers
+      desc: Training implementations
+      contents:
+        - core.trainers.base
+        - core.trainers.trl
+        - core.trainers.mamba
+        - core.trainers.dpo.trainer
+        - core.trainers.grpo.trainer
+        - core.trainers.grpo.sampler
+        - core.trainers.utils
+    - title: Model Loading
+      desc: Functionality for loading and patching models, tokenizers, etc.
+      contents:
+        - loaders.model
+        - loaders.tokenizer
+        - loaders.processor
+        - loaders.adapter
+        - loaders.patch_manager
+        - loaders.constants
+    - title: Mixins
+      desc: Mixin classes for augmenting trainers
+      contents:
+        - core.trainers.mixins.optimizer
+        - core.trainers.mixins.rng_state_loader
+        - core.trainers.mixins.scheduler
+    - title: Context Managers
+      desc: Context managers for altering trainer behaviors
+      contents:
+        - utils.ctx_managers.sequence_parallel
+    - title: Prompt Strategies
+      desc: Prompt formatting strategies
+      contents:
+        - prompt_strategies.base
+        - prompt_strategies.chat_template
+        - prompt_strategies.alpaca_chat
+        - prompt_strategies.alpaca_instruct
+        - prompt_strategies.alpaca_w_system
+        - prompt_strategies.user_defined
+        - prompt_strategies.llama2_chat
+        - prompt_strategies.completion
+        - prompt_strategies.input_output
+        - prompt_strategies.stepwise_supervised
+        - prompt_strategies.metharme
+        - prompt_strategies.orcamini
+        - prompt_strategies.pygmalion
+        - prompt_strategies.messages.chat
+        - prompt_strategies.dpo.chat_template
+        - prompt_strategies.dpo.llama3
+        - prompt_strategies.dpo.chatml
+        - prompt_strategies.dpo.zephyr
+        - prompt_strategies.dpo.user_defined
+        - prompt_strategies.dpo.passthrough
+        - prompt_strategies.kto.llama3
+        - prompt_strategies.kto.chatml
+        - prompt_strategies.kto.user_defined
+        - prompt_strategies.orpo.chat_template
+        - prompt_strategies.bradley_terry.llama3
+    - title: Kernels
+      desc: Low-level performance optimizations
+      contents:
+        - kernels.lora
+        - kernels.geglu
+        - kernels.swiglu
+        - kernels.quantize
+        - kernels.utils
+    - title: Monkey Patches
+      desc: Runtime patches for model optimizations
+      contents:
+        - monkeypatch.llama_attn_hijack_flash
+        - monkeypatch.llama_attn_hijack_xformers
+        - monkeypatch.mistral_attn_hijack_flash
+        - monkeypatch.multipack
+        - monkeypatch.relora
+        - monkeypatch.lora_kernels
+        - monkeypatch.utils
+        - monkeypatch.btlm_attn_hijack_flash
+        - monkeypatch.stablelm_attn_hijack_flash
+        - monkeypatch.trainer_fsdp_optim
+        - monkeypatch.transformers_fa_utils
+        - monkeypatch.data.batch_dataset_fetcher
+        - monkeypatch.mixtral
+        - monkeypatch.gradient_checkpointing.offload_cpu
+        - monkeypatch.gradient_checkpointing.offload_disk
+    - title: Utils
+      desc: Utility functions
+      contents:
+        - utils.tokenization
+        - utils.chat_templates
+        - utils.lora
+        - utils.model_shard_quant
+        - utils.bench
+        - utils.freeze
+        - utils.trainer
+        - utils.schedulers
+        - utils.distributed
+        - utils.dict
+        - utils.optimizers.adopt
+        - utils.data.streaming
+        - utils.data.sft
+        - utils.quantization
+    - title: Schemas
+      desc: Pydantic data models for Axolotl config
+      contents:
+        - utils.schemas.config
+        - utils.schemas.model
+        - utils.schemas.training
+        - utils.schemas.datasets
+        - utils.schemas.peft
+        - utils.schemas.trl
+        - utils.schemas.multimodal
+        - utils.schemas.integrations
+        - utils.schemas.enums
+        - utils.schemas.utils
+    - title: Integrations
+      desc: Third-party integrations and extensions
+      contents:
+        - integrations.base
+        - integrations.cut_cross_entropy.args
+        - integrations.grokfast.optimizer
+        - integrations.kd.trainer
+        - integrations.liger.args
+        - integrations.lm_eval.args
+        - integrations.spectrum.args
+    - title: Common
+      desc: Common utilities and shared functionality
+      contents:
+        - common.architectures
+        - common.const
+        - common.datasets
+    - title: Models
+      desc: Custom model implementations
+      contents:
+        - models.mamba.modeling_mamba
+    - title: Data Processing
+      desc: Data processing utilities
+      contents:
+        - utils.collators.core
+        - utils.collators.batching
+        - utils.collators.mamba
+        - utils.collators.mm_chat
+        - utils.samplers.multipack
+    - title: Callbacks
+      desc: Training callbacks
+      contents:
+        - utils.callbacks.perplexity
+        - utils.callbacks.profiler
+        - utils.callbacks.lisa
+        - utils.callbacks.mlflow_
+        - utils.callbacks.comet_
+        - utils.callbacks.qat
 website:
   title: "Axolotl"
   description: "We make fine-tuning accessible, scalable, and fun"
   favicon: favicon.jpg
 
+  google-analytics: "G-9KYCVJBNMQ"
+
   navbar:
     logo: image/axolotl_logo_digital_white.svg
     title: false
@@ -31,9 +237,54 @@ website:
         - section: "Getting Started"
           contents:
             - docs/getting-started.qmd
+            - docs/choosing_method.qmd
             - docs/installation.qmd
-            - docs/cli.qmd
             - docs/inference.qmd
+            - section: "Model Guides"
+              contents:
+                - docs/models/kimi-linear.qmd
+                - docs/models/plano.qmd
+                - docs/models/mimo.qmd
+                - docs/models/internvl3_5.qmd
+                - docs/models/olmo3.qmd
+                - docs/models/trinity.qmd
+                - docs/models/arcee.qmd
+                - section: "Ministral3"
+                  contents:
+                    - docs/models/ministral3.qmd
+                    - docs/models/ministral3/think.qmd
+                    - docs/models/ministral3/vision.qmd
+                - section: "Magistral"
+                  contents:
+                    - docs/models/magistral.qmd
+                    - docs/models/magistral/think.qmd
+                    - docs/models/magistral/vision.qmd
+                - docs/models/ministral.qmd
+                - docs/models/mistral-small.qmd
+                - docs/models/voxtral.qmd
+                - docs/models/devstral.qmd
+                - docs/models/mistral.qmd
+                - docs/models/llama-4.qmd
+                - docs/models/llama-2.qmd
+                - docs/models/qwen3-next.qmd
+                - docs/models/qwen3.qmd
+                - docs/models/gemma3n.qmd
+                - docs/models/apertus.qmd
+                - docs/models/gpt-oss.qmd
+                - docs/models/seed-oss.qmd
+                - docs/models/phi.qmd
+                - docs/models/smolvlm2.qmd
+                - docs/models/granite4.qmd
+                - docs/models/LiquidAI.qmd
+                - docs/models/hunyuan.qmd
+                - docs/models/jamba.qmd
+                - docs/models/orpheus.qmd
+
+            - docs/cli.qmd
+            - docs/telemetry.qmd
+            - docs/config-reference.qmd
+            - text: "API Reference"
+              href: docs/api
 
         - section: "Dataset Formats"
           contents: docs/dataset-formats/*
@@ -51,35 +302,66 @@ website:
           contents:
             - docs/multimodal.qmd
             - docs/rlhf.qmd
+            - docs/grpo.qmd
+            - docs/ebft.qmd
+            - docs/vllm_serving.qmd
             - docs/reward_modelling.qmd
             - docs/lr_groups.qmd
             - docs/lora_optims.qmd
+            - docs/dataset_loading.qmd
+            - docs/qat.qmd
+            - docs/quantize.qmd
+            - docs/1_58bit_finetuning.qmd
+            - docs/optimizations.qmd
 
         - section: "Core Concepts"
           contents:
             - docs/batch_vs_grad.qmd
             - docs/dataset_preprocessing.qmd
+            - docs/streaming.qmd
             - docs/multipack.qmd
+            - docs/mixed_precision.qmd
+            - docs/optimizers.qmd
+            - docs/attention.qmd
 
         - section: "Advanced Features"
           contents:
             - docs/fsdp_qlora.qmd
-            - docs/unsloth.qmd
             - docs/torchao.qmd
             - docs/custom_integrations.qmd
+            - docs/sequence_parallelism.qmd
+            - docs/gradient_checkpointing.qmd
+            - docs/nd_parallelism.qmd
+            - docs/expert_quantization.qmd
 
         - section: "Troubleshooting"
           contents:
             - docs/faq.qmd
+            - docs/training_stability.qmd
             - docs/debugging.qmd
             - docs/nccl.qmd
 
-        - section: "Reference"
-          contents:
-            - docs/config.qmd
-
 format:
   html:
     theme: darkly
     css: styles.css
     toc: true
+    # Enable better handling of line breaks in markdown
+    preserve-tabs: true
+    html-math-method: mathjax
+    # Improved markdown processing options
+    md-extensions:
+      - markdown_it
+      - def_list
+      - attr_list
+      - fenced_divs
+      - tables
+      - html_admonition
+      - lineblocks
+      - fancy_lists
+    # Control whitespace handling
+    whitespace: preserve
+    # Process newlines in paragraphs
+    wrap: preserve
+    # Better line break handling
+    preserve-linebreaks: true

benchmarks/bench_entropy.py

@@ -0,0 +1,208 @@
+"""Benchmark for entropy_from_logits Triton kernel vs original chunked implementation.
+
+Usage: CUDA_VISIBLE_DEVICES=0 python benchmarks/bench_entropy.py
+"""
+
+import gc
+import statistics
+
+import torch
+import torch.nn.functional as F
+
+from axolotl.monkeypatch.trainer.utils import entropy_from_logits
+
+V = 151936  # Qwen vocab
+WARMUP = 5
+BENCH_ITERS = 20
+MEM_ITERS = 10
+
+
+def entropy_from_logits_original(logits: torch.Tensor, chunk_size: int = 128):
+    """Original chunked implementation (reference)."""
+    original_shape = logits.shape[:-1]
+    num_classes = logits.shape[-1]
+    flat_logits = logits.reshape(-1, num_classes)
+    entropies = []
+    for chunk in flat_logits.split(chunk_size, dim=0):
+        logps = F.log_softmax(chunk, dim=-1)
+        chunk_entropy = -(torch.exp(logps) * logps).sum(-1)
+        entropies.append(chunk_entropy)
+    return torch.cat(entropies, dim=0).reshape(original_shape)
+
+
+def _clean_gpu():
+    gc.collect()
+    torch.cuda.empty_cache()
+    torch.cuda.reset_peak_memory_stats()
+    torch.cuda.reset_accumulated_memory_stats()
+    torch.cuda.synchronize()
+
+
+def profile_time(fn, logits, n_iters=BENCH_ITERS):
+    for _ in range(WARMUP):
+        out = fn(logits, chunk_size=128)
+        del out
+    torch.cuda.synchronize()
+
+    times = []
+    for _ in range(n_iters):
+        s = torch.cuda.Event(enable_timing=True)
+        e = torch.cuda.Event(enable_timing=True)
+        s.record()
+        out = fn(logits, chunk_size=128)
+        e.record()
+        torch.cuda.synchronize()
+        times.append(s.elapsed_time(e))
+        del out
+    return times
+
+
+def profile_memory(fn, logits, n_iters=MEM_ITERS):
+    for _ in range(WARMUP):
+        out = fn(logits, chunk_size=128)
+        del out
+    torch.cuda.synchronize()
+
+    peaks = []
+    for _ in range(n_iters):
+        _clean_gpu()
+        base = torch.cuda.max_memory_allocated()
+        out = fn(logits, chunk_size=128)
+        torch.cuda.synchronize()
+        peaks.append(torch.cuda.max_memory_allocated() - base)
+        del out
+    return [p / 1e6 for p in peaks]
+
+
+def fmt(values, unit=""):
+    mean = statistics.mean(values)
+    std = statistics.stdev(values) if len(values) > 1 else 0.0
+    return f"{mean:8.2f} ± {std:5.2f} {unit}  [min={min(values):.2f}, max={max(values):.2f}]"
+
+
+def benchmark_contiguous():
+    print("=" * 60)
+    print(
+        f"CONTIGUOUS BENCHMARK  (warmup={WARMUP}, time={BENCH_ITERS}, mem={MEM_ITERS})"
+    )
+    print("=" * 60)
+
+    configs = [
+        (1, 2048),
+        (1, 8192),
+        (1, 16384),
+        (4, 4096),
+        (8, 2048),
+        (16, 2048),
+        (16, 4096),
+    ]
+
+    for B, L in configs:
+        mem_gb = B * L * V * 2 / 1e9
+        if mem_gb > 28:
+            print(f"\n  skip B={B}, L={L} ({mem_gb:.1f} GB)")
+            continue
+
+        N = B * L
+        print(f"\n{'─' * 60}")
+        print(f"B={B:2d}, L={L:5d}  ({N:6d} rows, logits {mem_gb:.2f} GB)")
+        print(f"{'─' * 60}")
+
+        torch.manual_seed(42)
+        logits = torch.randn(B, L, V, device="cuda", dtype=torch.bfloat16)
+
+        t_orig = profile_time(entropy_from_logits_original, logits)
+        t_triton = profile_time(entropy_from_logits, logits)
+        orig_mean = statistics.mean(t_orig)
+        triton_mean = statistics.mean(t_triton)
+
+        print("  TIME (ms):")
+        print(f"    original: {fmt(t_orig, 'ms')}")
+        print(f"    triton:   {fmt(t_triton, 'ms')}")
+        print(f"    speedup:  {orig_mean / triton_mean:.2f}x")
+
+        m_orig = profile_memory(entropy_from_logits_original, logits)
+        m_triton = profile_memory(entropy_from_logits, logits)
+        orig_peak = statistics.mean(m_orig)
+        triton_peak = statistics.mean(m_triton)
+
+        print("  MEMORY (peak overhead):")
+        print(f"    original: {fmt(m_orig, 'MB')}")
+        print(f"    triton:   {fmt(m_triton, 'MB')}")
+        print(f"    saved:    {orig_peak - triton_peak:.1f} MB")
+
+        del logits
+        _clean_gpu()
+
+
+def benchmark_noncontiguous():
+    print("\n" + "=" * 60)
+    print(
+        f"NON-CONTIGUOUS BENCHMARK  (warmup={WARMUP}, time={BENCH_ITERS}, mem={MEM_ITERS})"
+    )
+    print("=" * 60)
+
+    configs = [
+        (4, 2048, "transpose"),
+        (4, 8192, "transpose"),
+        (8, 2048, "transpose"),
+        (4, 4096, "slice_batch"),
+    ]
+
+    for B, L, method in configs:
+        torch.manual_seed(42)
+
+        if method == "transpose":
+            raw = torch.randn(L, B, V, device="cuda", dtype=torch.bfloat16)
+            logits_nc = raw.transpose(0, 1)
+            raw_gb = L * B * V * 2 / 1e9
+        elif method == "slice_batch":
+            raw = torch.randn(B * 2, L, V, device="cuda", dtype=torch.bfloat16)
+            logits_nc = raw[::2]
+            raw_gb = B * 2 * L * V * 2 / 1e9
+        else:
+            continue
+
+        if raw_gb > 28:
+            print(f"\n  skip B={B}, L={L}, {method} ({raw_gb:.1f} GB)")
+            del raw, logits_nc
+            torch.cuda.empty_cache()
+            continue
+
+        N = B * L
+        print(f"\n{'─' * 60}")
+        print(f"B={B}, L={L}  {method}  ({N} rows, raw {raw_gb:.2f} GB)")
+        print(f"{'─' * 60}")
+
+        def original_with_copy(logits, chunk_size=128):
+            return entropy_from_logits_original(
+                logits.contiguous(), chunk_size=chunk_size
+            )
+
+        t_orig = profile_time(original_with_copy, logits_nc)
+        t_triton = profile_time(entropy_from_logits, logits_nc)
+        orig_mean = statistics.mean(t_orig)
+        triton_mean = statistics.mean(t_triton)
+
+        print("  TIME (ms):")
+        print(f"    orig+copy:     {fmt(t_orig, 'ms')}")
+        print(f"    triton-strided:{fmt(t_triton, 'ms')}")
+        print(f"    speedup:       {orig_mean / triton_mean:.2f}x")
+
+        m_orig = profile_memory(original_with_copy, logits_nc)
+        m_triton = profile_memory(entropy_from_logits, logits_nc)
+        orig_peak = statistics.mean(m_orig)
+        triton_peak = statistics.mean(m_triton)
+
+        print("  MEMORY (peak overhead):")
+        print(f"    orig+copy:     {fmt(m_orig, 'MB')}")
+        print(f"    triton-strided:{fmt(m_triton, 'MB')}")
+        print(f"    saved:         {orig_peak - triton_peak:.1f} MB")
+
+        del raw, logits_nc
+        _clean_gpu()
+
+
+if __name__ == "__main__":
+    benchmark_contiguous()
+    benchmark_noncontiguous()

benchmarks/bench_scattermoe_lora.py

@@ -0,0 +1,284 @@
+"""Benchmark for ScatterMoE LoRA Triton kernels.
+
+Measures forward, backward dX, and backward dA/dB kernels at common MoE
+model shapes. Reports per-kernel timings, LoRA overhead vs base scatter2scatter,
+and full fwd+bwd autograd throughput.
+
+Usage:
+  CUDA_VISIBLE_DEVICES=0 python benchmarks/bench_scattermoe_lora.py
+  CUDA_VISIBLE_DEVICES=0 python benchmarks/bench_scattermoe_lora.py --ranks 16 64
+  CUDA_VISIBLE_DEVICES=0 python benchmarks/bench_scattermoe_lora.py --models Qwen/Qwen3.5-35B-A3B
+"""
+
+import argparse
+import gc
+import time
+from functools import partial
+
+import torch
+
+from axolotl.integrations.kernels.libs.scattermoe_lora.kernels import (
+    lora_ops,
+    ops as base_ops,
+)
+from axolotl.integrations.kernels.libs.scattermoe_lora.parallel_experts import (
+    flatten_sort_count,
+)
+from axolotl.integrations.kernels.libs.scattermoe_lora.parallel_linear_lora import (
+    ScatterMoELoRA,
+)
+
+DEVICE = "cuda"
+DTYPE = torch.bfloat16
+WARMUP = 5
+ITERS = 20
+
+# ─── Model configs ──────────────────────────────────────────────────────────
+
+BUILTIN_CONFIGS = {
+    "Qwen3.5-35B-A3B": (256, 2048, 512, 8),  # E, H, I, k
+    "Qwen3-30B-A3B": (128, 2048, 768, 8),
+    "OLMoE-1B-7B": (64, 2048, 1024, 8),
+    "Mixtral-8x7B": (8, 4096, 14336, 2),
+}
+
+
+def _resolve_config(spec):
+    """Resolve a model spec to (E, H, I, k). Accepts builtin names or HF IDs."""
+    key = spec.lower().replace("/", "-")
+    for name, cfg in BUILTIN_CONFIGS.items():
+        if key in name.lower() or name.lower() in key:
+            return name, cfg
+
+    from transformers import AutoConfig
+
+    hf_cfg = AutoConfig.from_pretrained(spec, trust_remote_code=True)
+    if callable(getattr(hf_cfg, "get_text_config", None)):
+        tc = hf_cfg.get_text_config()
+        if hasattr(tc, "model_type") and tc.model_type != hf_cfg.model_type:
+            hf_cfg = tc
+    hidden = hf_cfg.hidden_size
+    inter = getattr(hf_cfg, "moe_intermediate_size", None) or hf_cfg.intermediate_size
+    experts = (
+        getattr(hf_cfg, "num_experts", None)
+        or getattr(hf_cfg, "num_local_experts", None)
+        or getattr(hf_cfg, "n_routed_experts", None)
+    )
+    top_k = (
+        getattr(hf_cfg, "num_experts_per_tok", None)
+        or getattr(hf_cfg, "num_experts_per_token", None)
+        or 2
+    )
+    name = spec.split("/")[-1]
+    return name, (experts, hidden, inter, top_k)
+
+
+# ─── Benchmark helpers ──────────────────────────────────────────────────────
+
+
+def _clean():
+    gc.collect()
+    torch.cuda.empty_cache()
+    torch.cuda.synchronize()
+
+
+def _bench(fn, warmup=WARMUP, iters=ITERS):
+    for _ in range(warmup):
+        fn()
+    torch.cuda.synchronize()
+    times = []
+    for _ in range(iters):
+        torch.cuda.synchronize()
+        t0 = time.perf_counter()
+        fn()
+        torch.cuda.synchronize()
+        times.append((time.perf_counter() - t0) * 1000)
+    times.sort()
+    return times[len(times) // 2]
+
+
+def _setup(num_experts, K, N, T, top_k, R):
+    torch.manual_seed(42)
+    x = torch.randn(T, K, device=DEVICE, dtype=DTYPE)
+    W = torch.randn(num_experts, K, N, device=DEVICE, dtype=DTYPE) * 0.02
+    lora_A = torch.randn(R * num_experts, K, device=DEVICE, dtype=DTYPE) * 0.01
+    lora_B = torch.randn(N, R * num_experts, device=DEVICE, dtype=DTYPE) * 0.01
+    logits = torch.randn(T, num_experts, device=DEVICE)
+    _, top_idx = torch.topk(torch.softmax(logits, dim=-1), top_k, dim=-1)
+    sei, ssi, eo = flatten_sort_count(top_idx, num_experts)
+    gx = base_ops.group(x, ssi, fan_out=top_k)
+    dy = torch.randn(gx.size(0), N, device=DEVICE, dtype=DTYPE)
+    return x, W, lora_A, lora_B, sei, ssi, eo, gx, dy
+
+
+# ─── Kernel wrappers (avoid B023 loop-variable capture) ──────────────────────
+
+
+def _call_fwd(x, W, sei, ssi, top_k, lA, lB):
+    return lora_ops.scatter2scatter_lora(
+        X=x,
+        W=W,
+        sorted_expert_idxs=sei,
+        sorted_scattered_idxs=ssi,
+        k=top_k,
+        lora_A=lA,
+        lora_B=lB,
+        scaling=2.0,
+    )
+
+
+def _call_base(x, W, sei, ssi, top_k):
+    return base_ops.scatter2scatter(
+        X=x,
+        W=W,
+        sorted_expert_idxs=sei,
+        sorted_scattered_idxs=ssi,
+        k=top_k,
+    )
+
+
+def _call_dx(dy, W, sei, ssi, lA, lB):
+    return lora_ops.scatter2scatter_lora_dX(
+        DY=dy,
+        W=W,
+        sorted_expert_idxs=sei,
+        sorted_scattered_idxs=ssi,
+        k=1,
+        lora_A=lA,
+        lora_B=lB,
+        scaling=2.0,
+        dy_grouped=True,
+        dx_grouped=False,
+    )
+
+
+def _call_bwd(dy, gx, lA, lB, eo, num_experts):
+    return lora_ops.group_bwd_lora(
+        DY=dy,
+        X=gx,
+        lora_A=lA,
+        lora_B=lB,
+        expert_offsets=eo,
+        E=num_experts,
+        scaling=2.0,
+    )
+
+
+# ─── Main ────────────────────────────────────────────────────────────────────
+
+
+def main():
+    parser = argparse.ArgumentParser(description="ScatterMoE LoRA kernel benchmark")
+    parser.add_argument(
+        "--models",
+        "-m",
+        nargs="+",
+        help="Model names or HF IDs (default: all builtins)",
+    )
+    parser.add_argument("--ranks", "-r", nargs="+", type=int, default=[16, 32, 64])
+    parser.add_argument("--seq-len", "-T", type=int, default=2048)
+    args = parser.parse_args()
+
+    T = args.seq_len
+    print(f"GPU: {torch.cuda.get_device_name()}")
+    print(f"T={T}, ranks={args.ranks}\n")
+
+    if args.models:
+        configs = [_resolve_config(m) for m in args.models]
+    else:
+        configs = list(BUILTIN_CONFIGS.items())
+
+    for model_name, (num_experts, hidden, inter, top_k) in configs:
+        print(f"{'=' * 70}")
+        print(f"  {model_name}: E={num_experts}, H={hidden}, I={inter}, k={top_k}")
+        print(f"{'=' * 70}")
+
+        for R in args.ranks:
+            for proj, K, N in [("gate_up", hidden, 2 * inter), ("down", inter, hidden)]:
+                _clean()
+                x, W, lA, lB, sei, ssi, eo, gx, dy = _setup(
+                    num_experts, K, N, T, top_k, R
+                )
+
+                # Forward with LoRA (auto-dispatched: fused or split)
+                dispatch = (
+                    "split"
+                    if (
+                        num_experts <= lora_ops._SPLIT_LORA_FWD_MAX_EXPERTS
+                        and K * N >= lora_ops._SPLIT_LORA_FWD_THRESHOLD
+                    )
+                    else "fused"
+                )
+                t_fwd = _bench(partial(_call_fwd, x, W, sei, ssi, top_k, lA, lB))
+                t_base = _bench(partial(_call_base, x, W, sei, ssi, top_k))
+                t_dx = _bench(partial(_call_dx, dy, W, sei, ssi, lA, lB))
+                t_bwd = _bench(partial(_call_bwd, dy, gx, lA, lB, eo, num_experts))
+
+                total = t_fwd + t_dx + t_bwd
+                overhead = t_fwd / t_base - 1 if t_base > 0 else 0
+
+                print(
+                    f"  R={R:>2} {proj:<8}  "
+                    f"fwd={t_fwd:>6.2f}ms [{dispatch}]  "
+                    f"base={t_base:>6.2f}ms "
+                    f"(+{overhead * 100:.0f}%)  "
+                    f"dx={t_dx:>6.2f}ms  bwd={t_bwd:>6.2f}ms  "
+                    f"total={total:>6.2f}ms"
+                )
+
+                # Full autograd fwd+bwd with memory measurement
+                x_ag = x.clone().requires_grad_(True)
+                lA_ag = lA.clone().requires_grad_(True)
+                lB_ag = lB.clone().requires_grad_(True)
+
+                def _run_autograd(
+                    _x=x_ag,
+                    _W=W,
+                    _k=top_k,
+                    _sei=sei,
+                    _ssi=ssi,
+                    _eo=eo,
+                    _lA=lA_ag,
+                    _lB=lB_ag,
+                ):
+                    out = ScatterMoELoRA.apply(
+                        _x,
+                        _W,
+                        _k,
+                        _sei,
+                        _ssi,
+                        _eo,
+                        _lA,
+                        _lB,
+                        2.0,
+                        None,
+                        None,
+                        False,
+                        False,
+                        True,
+                        False,
+                    )
+                    out.sum().backward()
+                    _x.grad = None
+                    _lA.grad = None
+                    _lB.grad = None
+
+                t_full = _bench(_run_autograd)
+
+                _clean()
+                torch.cuda.reset_peak_memory_stats()
+                mem_before = torch.cuda.memory_allocated()
+                _run_autograd()
+                torch.cuda.synchronize()
+                mem_peak = torch.cuda.max_memory_allocated() - mem_before
+
+                print(
+                    f"         full_fwd_bwd={t_full:>6.2f}ms  "
+                    f"peak_delta={mem_peak / 1e6:>6.1f}MB"
+                )
+
+        print()
+
+
+if __name__ == "__main__":
+    main()

benchmarks/bench_selective_logsoftmax.py

@@ -0,0 +1,191 @@
+"""Benchmark for selective_log_softmax Triton kernel vs original implementation.
+
+Usage: CUDA_VISIBLE_DEVICES=0 python benchmarks/bench_selective_logsoftmax.py
+"""
+
+import gc
+import statistics
+
+import torch
+
+from axolotl.monkeypatch.trainer.utils import (
+    selective_log_softmax,
+    selective_log_softmax_original,
+)
+
+V = 151936  # Qwen vocab
+WARMUP = 5
+BENCH_ITERS = 20
+MEM_ITERS = 10
+
+
+def _clean_gpu():
+    gc.collect()
+    torch.cuda.empty_cache()
+    torch.cuda.reset_peak_memory_stats()
+    torch.cuda.reset_accumulated_memory_stats()
+    torch.cuda.synchronize()
+
+
+def profile_time(fn, args, n_iters=BENCH_ITERS):
+    for _ in range(WARMUP):
+        fn(*args)
+    torch.cuda.synchronize()
+
+    times = []
+    for _ in range(n_iters):
+        s = torch.cuda.Event(enable_timing=True)
+        e = torch.cuda.Event(enable_timing=True)
+        s.record()
+        fn(*args)
+        e.record()
+        torch.cuda.synchronize()
+        times.append(s.elapsed_time(e))
+    return times
+
+
+def profile_memory(fn, args, n_iters=MEM_ITERS):
+    for _ in range(WARMUP):
+        out = fn(*args)
+        del out
+    torch.cuda.synchronize()
+
+    peaks = []
+    for _ in range(n_iters):
+        _clean_gpu()
+        base = torch.cuda.max_memory_allocated()
+        out = fn(*args)
+        torch.cuda.synchronize()
+        peaks.append(torch.cuda.max_memory_allocated() - base)
+        del out
+    return [p / 1e6 for p in peaks]
+
+
+def fmt(values, unit=""):
+    mean = statistics.mean(values)
+    std = statistics.stdev(values) if len(values) > 1 else 0.0
+    return f"{mean:8.2f} ± {std:5.2f} {unit}  [min={min(values):.2f}, max={max(values):.2f}]"
+
+
+def benchmark_forward():
+    print("=" * 60)
+    print(f"FORWARD BENCHMARK  (warmup={WARMUP}, time={BENCH_ITERS}, mem={MEM_ITERS})")
+    print("=" * 60)
+
+    configs = [
+        (1, 2048),
+        (1, 8192),
+        (4, 4096),
+        (8, 2048),
+        (16, 2048),
+        (16, 4096),
+    ]
+
+    for B, L in configs:
+        mem_gb = B * L * V * 2 / 1e9
+        if mem_gb > 28:
+            print(f"\n  skip B={B}, L={L} ({mem_gb:.1f} GB)")
+            continue
+
+        N = B * L
+        print(f"\n{'─' * 60}")
+        print(f"B={B:2d}, L={L:5d}  ({N:6d} rows, logits {mem_gb:.2f} GB)")
+        print(f"{'─' * 60}")
+
+        torch.manual_seed(42)
+        logits = torch.randn(B, L, V, device="cuda", dtype=torch.bfloat16)
+        index = torch.randint(0, V, (B, L), device="cuda")
+
+        t_orig = profile_time(selective_log_softmax_original, (logits, index))
+        t_triton = profile_time(selective_log_softmax, (logits, index))
+        orig_mean = statistics.mean(t_orig)
+        triton_mean = statistics.mean(t_triton)
+
+        print("  TIME (ms):")
+        print(f"    original: {fmt(t_orig, 'ms')}")
+        print(f"    triton:   {fmt(t_triton, 'ms')}")
+        print(f"    speedup:  {orig_mean / triton_mean:.2f}x")
+
+        m_orig = profile_memory(selective_log_softmax_original, (logits, index))
+        m_triton = profile_memory(selective_log_softmax, (logits, index))
+        orig_peak = statistics.mean(m_orig)
+        triton_peak = statistics.mean(m_triton)
+
+        print("  MEMORY (peak overhead):")
+        print(f"    original: {fmt(m_orig, 'MB')}")
+        print(f"    triton:   {fmt(m_triton, 'MB')}")
+        print(f"    saved:    {orig_peak - triton_peak:.1f} MB")
+
+        del logits, index
+        _clean_gpu()
+
+
+def benchmark_backward():
+    print("\n" + "=" * 60)
+    print(f"FWD+BWD BENCHMARK  (warmup={WARMUP}, time={BENCH_ITERS}, mem={MEM_ITERS})")
+    print("=" * 60)
+
+    configs = [
+        (1, 2048),
+        (1, 8192),
+        (4, 4096),
+        (8, 2048),
+        (16, 2048),
+        (16, 4096),
+    ]
+
+    def fwd_bwd_original(logits, index):
+        logits.grad = None
+        out = selective_log_softmax_original(logits, index)
+        out.sum().backward()
+
+    def fwd_bwd_triton(logits, index):
+        logits.grad = None
+        out = selective_log_softmax(logits, index)
+        out.sum().backward()
+
+    for B, L in configs:
+        mem_gb = B * L * V * 2 / 1e9
+        if mem_gb > 20:
+            print(f"\n  skip B={B}, L={L} ({mem_gb:.1f} GB, need room for grads)")
+            continue
+
+        N = B * L
+        print(f"\n{'─' * 60}")
+        print(f"B={B:2d}, L={L:5d}  ({N:6d} rows, logits {mem_gb:.2f} GB)")
+        print(f"{'─' * 60}")
+
+        torch.manual_seed(42)
+        logits_orig = torch.randn(
+            B, L, V, device="cuda", dtype=torch.bfloat16, requires_grad=True
+        )
+        logits_tri = logits_orig.detach().clone().requires_grad_(True)
+        index = torch.randint(0, V, (B, L), device="cuda")
+
+        t_orig = profile_time(fwd_bwd_original, (logits_orig, index))
+        t_triton = profile_time(fwd_bwd_triton, (logits_tri, index))
+        orig_mean = statistics.mean(t_orig)
+        triton_mean = statistics.mean(t_triton)
+
+        print("  FWD+BWD TIME (ms):")
+        print(f"    original: {fmt(t_orig, 'ms')}")
+        print(f"    triton:   {fmt(t_triton, 'ms')}")
+        print(f"    speedup:  {orig_mean / triton_mean:.2f}x")
+
+        m_orig = profile_memory(fwd_bwd_original, (logits_orig, index))
+        m_triton = profile_memory(fwd_bwd_triton, (logits_tri, index))
+        orig_peak = statistics.mean(m_orig)
+        triton_peak = statistics.mean(m_triton)
+
+        print("  FWD+BWD MEMORY (peak overhead):")
+        print(f"    original: {fmt(m_orig, 'MB')}")
+        print(f"    triton:   {fmt(m_triton, 'MB')}")
+        print(f"    saved:    {orig_peak - triton_peak:.1f} MB")
+
+        del logits_orig, logits_tri, index
+        _clean_gpu()
+
+
+if __name__ == "__main__":
+    benchmark_forward()
+    benchmark_backward()

cicd/Dockerfile-uv.jinja

@@ -0,0 +1,55 @@
+FROM axolotlai/axolotl-base-uv:{{ BASE_TAG }}
+
+ENV TORCH_CUDA_ARCH_LIST="7.0 7.5 8.0 8.6 9.0+PTX"
+ENV AXOLOTL_EXTRAS="{{ AXOLOTL_EXTRAS }}"
+ENV AXOLOTL_ARGS="{{ AXOLOTL_ARGS }}"
+ENV CUDA="{{ CUDA }}"
+ENV PYTORCH_VERSION="{{ PYTORCH_VERSION }}"
+ENV GITHUB_REF="{{ GITHUB_REF }}"
+ENV GITHUB_SHA="{{ GITHUB_SHA }}"
+ENV NIGHTLY_BUILD="{{ NIGHTLY_BUILD }}"
+ENV HF_HOME="{{ HF_HOME }}"
+
+RUN apt-get update && \
+    apt-get install -y --allow-change-held-packages vim curl nano zstd libnccl2 libnccl-dev ibverbs-providers ibverbs-utils infiniband-diags librdmacm-dev librdmacm1 rdmacm-utils slurm-wlm
+
+WORKDIR /workspace
+
+RUN git clone --depth=1 https://github.com/axolotl-ai-cloud/axolotl.git
+
+WORKDIR /workspace/axolotl
+
+RUN git fetch origin +$GITHUB_REF && \
+    git checkout FETCH_HEAD
+
+RUN uv pip install packaging==26.0 setuptools==78.1.1
+RUN uv pip install torchvision
+RUN uv pip uninstall causal_conv1d
+RUN if [ "$AXOLOTL_EXTRAS" != "" ] ; then \
+        uv pip install --no-build-isolation -e .[deepspeed,flash-attn,ring-flash-attn,optimizers,ray,$AXOLOTL_EXTRAS] $AXOLOTL_ARGS; \
+    else \
+        uv pip install --no-build-isolation -e .[deepspeed,flash-attn,ring-flash-attn,optimizers,ray] $AXOLOTL_ARGS; \
+    fi
+
+# Override with nightly HF packages for nightly builds
+RUN if [ "$NIGHTLY_BUILD" = "true" ] ; then \
+        uv pip install --no-deps \
+            "transformers @ git+https://github.com/huggingface/transformers.git@main" \
+            "peft @ git+https://github.com/huggingface/peft.git@main" \
+            "accelerate @ git+https://github.com/huggingface/accelerate.git@main" \
+            "trl @ git+https://github.com/huggingface/trl.git@main" \
+            "datasets @ git+https://github.com/huggingface/datasets.git@main"; \
+    fi
+
+RUN python scripts/cutcrossentropy_install.py --uv | sh
+
+# So we can test the Docker image
+RUN uv pip install black mypy pre-commit types-requests quartodoc jupyter blobfile tiktoken \
+    codecov codecov-cli pytest pytest-cov pytest-retry pytest-sugar pytest-xdist tbparse
+
+# fix so that git fetch/pull from remote works
+RUN git config remote.origin.fetch "+refs/heads/*:refs/remotes/origin/*" && \
+    git config --get remote.origin.fetch
+
+# helper for huggingface-login cli
+RUN git config --global credential.helper store

cicd/Dockerfile.jinja

@@ -1,51 +0,0 @@
-FROM axolotlai/axolotl-base:{{ BASE_TAG }}
-
-ENV TORCH_CUDA_ARCH_LIST="7.0 7.5 8.0 8.6+PTX"
-ENV AXOLOTL_EXTRAS="{{ AXOLOTL_EXTRAS }}"
-ENV AXOLOTL_ARGS="{{ AXOLOTL_ARGS }}"
-ENV CUDA="{{ CUDA }}"
-ENV PYTORCH_VERSION="{{ PYTORCH_VERSION }}"
-ENV GITHUB_REF="{{ GITHUB_REF }}"
-ENV GITHUB_SHA="{{ GITHUB_SHA }}"
-ENV NIGHTLY_BUILD="{{ NIGHTLY_BUILD }}"
-ENV HF_HOME="{{ HF_HOME }}"
-
-RUN apt-get update && \
-    apt-get install -y --allow-change-held-packages vim curl nano libnccl2 libnccl-dev
-
-WORKDIR /workspace
-
-RUN git clone --depth=1 https://github.com/axolotl-ai-cloud/axolotl.git
-
-WORKDIR /workspace/axolotl
-
-RUN git fetch origin +$GITHUB_REF && \
-    git checkout FETCH_HEAD
-
-# If AXOLOTL_EXTRAS is set, append it in brackets
-RUN if [ "$NIGHTLY_BUILD" = "true" ] ; then \
-        sed -i 's#^transformers.*#transformers @ git+https://github.com/huggingface/transformers.git@main#' requirements.txt; \
-        sed -i 's#^peft.*#peft @ git+https://github.com/huggingface/peft.git@main#' requirements.txt; \
-        sed -i 's#^accelerate.*#accelerate @ git+https://github.com/huggingface/accelerate.git@main#' requirements.txt; \
-        sed -i 's#^trl.*#trl @ git+https://github.com/huggingface/trl.git@main#' requirements.txt; \
-        sed -i 's#^datasets.*#datasets @ git+https://github.com/huggingface/datasets.git@main#' requirements.txt; \
-    fi
-
-RUN if [ "$AXOLOTL_EXTRAS" != "" ] ; then \
-        pip install --no-build-isolation -e .[deepspeed,flash-attn,optimizers,ray,$AXOLOTL_EXTRAS] $AXOLOTL_ARGS; \
-    else \
-        pip install --no-build-isolation -e .[deepspeed,flash-attn,optimizers,ray] $AXOLOTL_ARGS; \
-    fi
-
-RUN python scripts/unsloth_install.py | sh
-RUN python scripts/cutcrossentropy_install.py | sh
-
-# So we can test the Docker image
-RUN pip install -r requirements-dev.txt -r requirements-tests.txt
-
-# fix so that git fetch/pull from remote works
-RUN git config remote.origin.fetch "+refs/heads/*:refs/remotes/origin/*" && \
-    git config --get remote.origin.fetch
-
-# helper for huggingface-login cli
-RUN git config --global credential.helper store

cicd/cicd.sh

@@ -1,11 +1,73 @@
 #!/bin/bash
 set -e
 
-python -c "import torch; assert '$PYTORCH_VERSION' in torch.__version__"
+python -c "import torch; assert '$PYTORCH_VERSION' in torch.__version__, f'Expected torch $PYTORCH_VERSION but got {torch.__version__}'"
 
-pytest -v --durations=10 -n8 --ignore=tests/e2e/ --ignore=tests/patched/ /workspace/axolotl/tests/
-pytest -v --durations=10 /workspace/axolotl/tests/e2e/patched/lora_kernels  # running these with the other patches causes a failure
-pytest -v --durations=10 --ignore=tests/e2e/patched/lora_kernels /workspace/axolotl/tests/e2e/patched
-pytest -v --durations=10 -n1 /workspace/axolotl/tests/e2e/solo/
-pytest -v --durations=10 /workspace/axolotl/tests/e2e/integrations/
-pytest -v --durations=10 --ignore=tests/e2e/solo/ --ignore=tests/e2e/patched/ --ignore=tests/e2e/multigpu/ --ignore=tests/e2e/integrations/ /workspace/axolotl/tests/e2e/
+set -o pipefail
+for i in 1 2 3; do
+  if curl --silent --show-error --fail -L \
+    https://axolotl-ci.b-cdn.net/hf-cache.tar.zst \
+    | tar -xpf - -C "${HF_HOME}/hub/" --use-compress-program unzstd --strip-components=1; then
+    echo "HF cache extracted successfully"
+    break
+  fi
+  echo "Attempt $i failed, cleaning up and retrying in 15s..."
+  rm -rf "${HF_HOME}/hub/"*
+  sleep 15
+done
+# hf download "NousResearch/Meta-Llama-3-8B"
+# hf download "NousResearch/Meta-Llama-3-8B-Instruct"
+# hf download "microsoft/Phi-4-reasoning"
+# hf download "microsoft/Phi-3.5-mini-instruct"
+# hf download "microsoft/Phi-3-medium-128k-instruct"
+
+# Run unit tests with initial coverage report
+pytest -v --durations=10 -n8 \
+  --ignore=tests/e2e/ \
+  --ignore=tests/patched/ \
+  --ignore=tests/cli \
+  /workspace/axolotl/tests/ \
+  --cov=axolotl
+
+# Run lora kernels tests with coverage append
+pytest -v --durations=10 \
+  /workspace/axolotl/tests/e2e/patched/lora_kernels \
+  --cov=axolotl \
+  --cov-append
+
+# Run patched tests excluding lora kernels with coverage append
+pytest --full-trace -vvv --durations=10 \
+  --ignore=tests/e2e/patched/lora_kernels \
+  /workspace/axolotl/tests/e2e/patched \
+  --cov=axolotl \
+  --cov-append
+
+# Run solo tests with coverage append
+pytest -v --durations=10 -n1 \
+  /workspace/axolotl/tests/e2e/solo/ \
+  --cov=axolotl \
+  --cov-append
+
+# Run integration tests with coverage append
+pytest -v --durations=10 \
+  /workspace/axolotl/tests/e2e/integrations/ \
+  --cov=axolotl \
+  --cov-append
+
+pytest -v --durations=10 /workspace/axolotl/tests/cli \
+  --cov=axolotl \
+  --cov-append
+
+# Run remaining e2e tests with coverage append and final report
+pytest -v --durations=10 \
+  --ignore=tests/e2e/solo/ \
+  --ignore=tests/e2e/patched/ \
+  --ignore=tests/e2e/multigpu/ \
+  --ignore=tests/e2e/integrations/ \
+  --ignore=tests/cli \
+  /workspace/axolotl/tests/e2e/ \
+  --cov=axolotl \
+  --cov-append \
+  --cov-report=xml:e2e-coverage.xml
+
+codecov upload-process -t $CODECOV_TOKEN -f e2e-coverage.xml -F e2e,pytorch-${PYTORCH_VERSION} || true

cicd/cleanup.py

@@ -0,0 +1,19 @@
+"""Modal app to run axolotl GPU cleanup"""
+
+from .single_gpu import VOLUME_CONFIG, app, cicd_image, run_cmd
+
+
+@app.function(
+    image=cicd_image,
+    timeout=60 * 60,
+    cpu=8.0,
+    memory=131072,
+    volumes=VOLUME_CONFIG,
+)
+def cleanup():
+    run_cmd("./cicd/cleanup.sh", "/workspace/axolotl")
+
+
+@app.local_entrypoint()
+def main():
+    cleanup.remote()

cicd/cleanup.sh

@@ -0,0 +1,6 @@
+#!/bin/bash
+set -e
+
+# cleanup old cache files for datasets processing and intermediate mappings
+find /workspace/data/huggingface-cache/hub/datasets -name "cache-*" -type f -mtime +1 -exec rm {} \;
+find /workspace/data/huggingface-cache/hub/datasets -name "*.lock" -type f -mtime +1 -exec rm {} \;

cicd/e2e_tests.py

@@ -0,0 +1,20 @@
+"""Modal app to run axolotl GPU tests"""
+
+from .single_gpu import GPU_CONFIG, VOLUME_CONFIG, app, cicd_image, run_cmd
+
+
+@app.function(
+    image=cicd_image,
+    gpu=GPU_CONFIG,
+    timeout=120 * 60,  # 90 min
+    cpu=8.0,
+    memory=131072,
+    volumes=VOLUME_CONFIG,
+)
+def cicd_pytest():
+    run_cmd("./cicd/cicd.sh", "/workspace/axolotl")
+
+
+@app.local_entrypoint()
+def main():
+    cicd_pytest.remote()

cicd/multigpu.py

@@ -1,7 +1,6 @@
 """
- modal application to run axolotl gpu tests in Modal
- """
-# pylint: disable=duplicate-code
+modal application to run axolotl gpu tests in Modal
+"""
 
 import os
 import pathlib
@@ -18,17 +17,22 @@ template_loader = jinja2.FileSystemLoader(searchpath=cicd_path)
 template_env = jinja2.Environment(
     loader=template_loader, autoescape=select_autoescape()
 )
-df_template = template_env.get_template("Dockerfile.jinja")
+dockerfile = os.environ.get("E2E_DOCKERFILE", "Dockerfile-uv.jinja")
+df_template = template_env.get_template(dockerfile)
 
 df_args = {
     "AXOLOTL_EXTRAS": os.environ.get("AXOLOTL_EXTRAS", ""),
     "AXOLOTL_ARGS": os.environ.get("AXOLOTL_ARGS", ""),
-    "PYTORCH_VERSION": os.environ.get("PYTORCH_VERSION", "2.4.1"),
-    "BASE_TAG": os.environ.get("BASE_TAG", "main-base-py3.11-cu121-2.4.1"),
-    "CUDA": os.environ.get("CUDA", "121"),
+    "PYTORCH_VERSION": os.environ.get("PYTORCH_VERSION", "2.6.0"),
+    "BASE_TAG": os.environ.get("BASE_TAG", "main-base-py3.11-cu126-2.6.0"),
+    "CUDA": os.environ.get("CUDA", "126"),
     "GITHUB_REF": os.environ.get("GITHUB_REF", "refs/heads/main"),
     "GITHUB_SHA": os.environ.get("GITHUB_SHA", ""),
+    "NIGHTLY_BUILD": os.environ.get("NIGHTLY_BUILD", ""),
+    "CODECOV_TOKEN": os.environ.get("CODECOV_TOKEN", ""),
     "HF_HOME": "/workspace/data/huggingface-cache/hub",
+    "PYTHONUNBUFFERED": os.environ.get("PYTHONUNBUFFERED", "1"),
+    "DEEPSPEED_LOG_LEVEL": os.environ.get("DEEPSPEED_LOG_LEVEL", "WARNING"),
 }
 
 dockerfile_contents = df_template.render(**df_args)
@@ -53,7 +57,7 @@ VOLUME_CONFIG = {
 }
 
 N_GPUS = int(os.environ.get("N_GPUS", 2))
-GPU_CONFIG = modal.gpu.H100(count=N_GPUS)
+GPU_CONFIG = f"H100:{N_GPUS}"
 
 
 def run_cmd(cmd: str, run_folder: str):
@@ -61,14 +65,14 @@ def run_cmd(cmd: str, run_folder: str):
 
     # Propagate errors from subprocess.
     if exit_code := subprocess.call(cmd.split(), cwd=run_folder):  # nosec
-        exit(exit_code)  # pylint: disable=consider-using-sys-exit
+        exit(exit_code)
 
 
 @app.function(
     image=cicd_image,
     gpu=GPU_CONFIG,
-    timeout=60 * 60,
-    cpu=8.0,
+    timeout=120 * 60,
+    cpu=16.0,
     memory=131072 * N_GPUS,
     volumes=VOLUME_CONFIG,
 )

cicd/multigpu.sh

@@ -1,5 +1,25 @@
 #!/bin/bash
 set -e
 
-# only run one test at a time so as not to OOM the GPU
-pytest -v -n2 /workspace/axolotl/tests/e2e/multigpu/
+# Only run two tests at a time to avoid OOM on GPU (with coverage collection)
+pytest -v --durations=10 -n2 --maxfail=3 \
+  --ignore=/workspace/axolotl/tests/e2e/multigpu/solo/ \
+  --ignore=/workspace/axolotl/tests/e2e/multigpu/patched/ \
+  /workspace/axolotl/tests/e2e/multigpu/ \
+  --cov=axolotl
+
+# Run solo tests with coverage append
+pytest -v --durations=10 -n1 \
+  /workspace/axolotl/tests/e2e/multigpu/solo/ \
+  --cov=axolotl \
+  --cov-append
+
+pytest -v  --durations=10 -n1 /workspace/axolotl/tests/e2e/multigpu/patched/ \
+  --cov=axolotl \
+  --cov-append \
+  --cov-report=xml:multigpu-coverage.xml
+
+# Upload coverage to Codecov if CODECOV_TOKEN is available
+if [ -n "$CODECOV_TOKEN" ]; then
+  codecov upload-process -t "${CODECOV_TOKEN}" -f multigpu-coverage.xml -F multigpu,docker-tests,pytorch-${PYTORCH_VERSION} || true
+fi

cicd/single_gpu.py

@@ -1,5 +1,4 @@
 """Modal app to run axolotl GPU tests"""
-# pylint: disable=duplicate-code
 
 import os
 import pathlib
@@ -7,8 +6,9 @@ import tempfile
 
 import jinja2
 import modal
+import modal.experimental
 from jinja2 import select_autoescape
-from modal import App, Image
+from modal import App
 
 cicd_path = pathlib.Path(__file__).parent.resolve()
 
@@ -16,18 +16,22 @@ template_loader = jinja2.FileSystemLoader(searchpath=cicd_path)
 template_env = jinja2.Environment(
     loader=template_loader, autoescape=select_autoescape()
 )
-df_template = template_env.get_template("Dockerfile.jinja")
+dockerfile = os.environ.get("E2E_DOCKERFILE", "Dockerfile-uv.jinja")
+df_template = template_env.get_template(dockerfile)
 
 df_args = {
     "AXOLOTL_EXTRAS": os.environ.get("AXOLOTL_EXTRAS", ""),
     "AXOLOTL_ARGS": os.environ.get("AXOLOTL_ARGS", ""),
-    "PYTORCH_VERSION": os.environ.get("PYTORCH_VERSION", "2.4.1"),
-    "BASE_TAG": os.environ.get("BASE_TAG", "main-base-py3.11-cu121-2.4.1"),
-    "CUDA": os.environ.get("CUDA", "121"),
+    "PYTORCH_VERSION": os.environ.get("PYTORCH_VERSION", "2.6.0"),
+    "BASE_TAG": os.environ.get("BASE_TAG", "main-base-py3.11-cu126-2.6.0"),
+    "CUDA": os.environ.get("CUDA", "126"),
     "GITHUB_REF": os.environ.get("GITHUB_REF", "refs/heads/main"),
     "GITHUB_SHA": os.environ.get("GITHUB_SHA", ""),
     "NIGHTLY_BUILD": os.environ.get("NIGHTLY_BUILD", ""),
+    "CODECOV_TOKEN": os.environ.get("CODECOV_TOKEN", ""),
     "HF_HOME": "/workspace/data/huggingface-cache/hub",
+    "PYTHONUNBUFFERED": os.environ.get("PYTHONUNBUFFERED", "1"),
+    "DEEPSPEED_LOG_LEVEL": os.environ.get("DEEPSPEED_LOG_LEVEL", "WARNING"),
 }
 
 dockerfile_contents = df_template.render(**df_args)
@@ -36,11 +40,11 @@ temp_dir = tempfile.mkdtemp()
 with open(pathlib.Path(temp_dir) / "Dockerfile", "w", encoding="utf-8") as f:
     f.write(dockerfile_contents)
 
-cicd_image = Image.from_dockerfile(
+cicd_image = modal.experimental.raw_dockerfile_image(
     pathlib.Path(temp_dir) / "Dockerfile",
-    context_mount=None,
+    # context_mount=None,
     force_build=True,
-    gpu="A10G",
+    # gpu="A10G",
 ).env(df_args)
 
 app = App("Axolotl CI/CD", secrets=[])
@@ -53,29 +57,17 @@ VOLUME_CONFIG = {
 }
 
 N_GPUS = int(os.environ.get("N_GPUS", 1))
-GPU_CONFIG = modal.gpu.L40S(count=N_GPUS)
+GPU_TYPE = os.environ.get("GPU_TYPE", "L40S")
+GPU_CONFIG = f"{GPU_TYPE}:{N_GPUS}"
 
 
 def run_cmd(cmd: str, run_folder: str):
     import subprocess  # nosec
 
+    sp_env = os.environ.copy()
+    sp_env["AXOLOTL_DATASET_NUM_PROC"] = "8"
+
     # Propagate errors from subprocess.
-    if exit_code := subprocess.call(cmd.split(), cwd=run_folder):  # nosec
-        exit(exit_code)  # pylint: disable=consider-using-sys-exit
-
-
-@app.function(
-    image=cicd_image,
-    gpu=GPU_CONFIG,
-    timeout=60 * 60,
-    cpu=8.0,
-    memory=131072,
-    volumes=VOLUME_CONFIG,
-)
-def cicd_pytest():
-    run_cmd("./cicd/cicd.sh", "/workspace/axolotl")
-
-
-@app.local_entrypoint()
-def main():
-    cicd_pytest.remote()
+    exit_code = subprocess.call(cmd.split(), cwd=run_folder, env=sp_env)  # nosec
+    if exit_code:
+        raise RuntimeError(f"Command '{cmd}' failed with exit code {exit_code}")

codecov.yml

@@ -0,0 +1,58 @@
+codecov:
+  require_ci_to_pass: yes
+  notify:
+    wait_for_ci: true
+
+coverage:
+  precision: 2
+  round: down
+  range: "70...100"
+  status:
+    project:
+      default:
+        # basic
+        target: auto
+        threshold: 1%
+        base: auto
+        # advanced
+        branches: null
+        if_no_uploads: error
+        if_not_found: success
+        if_ci_failed: error
+        only_pulls: true
+        flags: null
+        paths: null
+        informational: true
+    patch:
+      default:
+        # basic
+        target: auto
+        threshold: 1%
+        base: auto
+        # advanced
+        branches: null
+        if_no_uploads: error
+        if_not_found: success
+        if_ci_failed: error
+        only_pulls: false
+        flags: null
+        paths: null
+        informational: true
+
+parsers:
+  gcov:
+    branch_detection:
+      conditional: yes
+      loop: yes
+      method: no
+      macro: no
+
+comment:
+  layout: "reach,diff,flags,files,footer"
+  behavior: default
+  require_changes: no
+  require_base: no
+  require_head: yes
+
+github_checks:
+  annotations: false

deepspeed_configs/zero2_torch_compile.json

@@ -0,0 +1,31 @@
+{
+  "compile": {
+    "disable": false,
+    "backend": "inductor"
+  },
+  "zero_optimization": {
+    "stage": 2,
+    "offload_optimizer": {
+      "device": "cpu"
+    },
+    "contiguous_gradients": true,
+    "overlap_comm": true
+  },
+  "bf16": {
+    "enabled": "auto"
+  },
+  "fp16": {
+    "enabled": "auto",
+    "auto_cast": false,
+    "loss_scale": 0,
+    "initial_scale_power": 32,
+    "loss_scale_window": 1000,
+    "hysteresis": 2,
+    "min_loss_scale": 1
+  },
+  "gradient_accumulation_steps": "auto",
+  "gradient_clipping": "auto",
+  "train_batch_size": "auto",
+  "train_micro_batch_size_per_gpu": "auto",
+  "wall_clock_breakdown": false
+}

deepspeed_configs/zero3.json

@@ -7,9 +7,9 @@
     "reduce_bucket_size": "auto",
     "stage3_prefetch_bucket_size": "auto",
     "stage3_param_persistence_threshold": "auto",
-    "stage3_max_live_parameters": 0,
-    "stage3_max_reuse_distance": 0,
-    "stage3_gather_16bit_weights_on_model_save": true
+    "max_live_parameters": 0,
+    "max_reuse_distance": 0,
+    "gather_16bit_weights_on_model_save": true
   },
   "bf16": {
     "enabled": "auto"

deepspeed_configs/zero3_bf16.json

@@ -7,9 +7,9 @@
     "reduce_bucket_size": "auto",
     "stage3_prefetch_bucket_size": "auto",
     "stage3_param_persistence_threshold": "auto",
-    "stage3_max_live_parameters": 0,
-    "stage3_max_reuse_distance": 0,
-    "stage3_gather_16bit_weights_on_model_save": true
+    "max_live_parameters": 0,
+    "max_reuse_distance": 0,
+    "gather_16bit_weights_on_model_save": true
   },
   "bf16": {
     "enabled": true

deepspeed_configs/zero3_bf16_cpuoffload_all.json

@@ -17,9 +17,9 @@
     "reduce_bucket_size": "auto",
     "stage3_prefetch_bucket_size": "auto",
     "stage3_param_persistence_threshold": "auto",
-    "stage3_max_live_parameters": 0,
-    "stage3_max_reuse_distance": 0,
-    "stage3_gather_16bit_weights_on_model_save": true
+    "max_live_parameters": 0,
+    "max_reuse_distance": 0,
+    "gather_16bit_weights_on_model_save": true
   },
   "bf16": {
     "enabled": true

deepspeed_configs/zero3_bf16_cpuoffload_params.json

@@ -13,9 +13,9 @@
     "reduce_bucket_size": "auto",
     "stage3_prefetch_bucket_size": "auto",
     "stage3_param_persistence_threshold": "auto",
-    "stage3_max_live_parameters": 0,
-    "stage3_max_reuse_distance": 0,
-    "stage3_gather_16bit_weights_on_model_save": true
+    "max_live_parameters": 0,
+    "max_reuse_distance": 0,
+    "gather_16bit_weights_on_model_save": true
   },
   "bf16": {
     "enabled": true

devtools/dev_chat_template.yml

@@ -13,7 +13,7 @@ datasets:
 val_set_size: 0
 output_dir: temp_debug/axolotl_outputs/model
 dataset_prepared_path: temp_debug/axolotl_outputs/data
-dataset_processes: 1
+dataset_num_proc: 1
 
 sequence_len: 4096
 sample_packing: false

docker/Dockerfile

@@ -6,11 +6,14 @@ ARG AXOLOTL_EXTRAS=""
 ARG AXOLOTL_ARGS=""
 ARG CUDA="118"
 ARG PYTORCH_VERSION="2.1.2"
+ARG TARGETARCH
 
 ENV PYTORCH_VERSION=$PYTORCH_VERSION
 
 RUN apt-get update && \
-    apt-get install -y --allow-change-held-packages vim curl nano libnccl2 libnccl-dev rsync s3fs
+    apt-get install -y --allow-change-held-packages vim curl nano libnccl2 libnccl-dev rsync s3fs && \
+    rm -rf /var/cache/apt/archives && \
+    rm -rf /var/lib/apt/lists/*
 
 WORKDIR /workspace
 
@@ -18,22 +21,27 @@ RUN git clone --depth=1 https://github.com/axolotl-ai-cloud/axolotl.git
 
 WORKDIR /workspace/axolotl
 
-# If AXOLOTL_EXTRAS is set, append it in brackets
-RUN if [ "$AXOLOTL_EXTRAS" != "" ] ; then \
-        pip install --no-build-isolation -e .[deepspeed,flash-attn,optimizers,ray,$AXOLOTL_EXTRAS] $AXOLOTL_ARGS; \
+# If AXOLOTL_EXTRAS is set, append it in brackets; don't install deepspeed with arm64
+RUN pip uninstall -y causal_conv1d
+RUN if [ "$TARGETARCH" = "arm64" ]; then \
+        BASE_EXTRAS="optimizers,ray"; \
     else \
-        pip install --no-build-isolation -e .[deepspeed,flash-attn,optimizers,ray] $AXOLOTL_ARGS; \
-    fi
+        BASE_EXTRAS="deepspeed,optimizers,ray"; \
+    fi && \
+    if [ "$AXOLOTL_EXTRAS" != "" ]; then \
+        pip install --no-build-isolation -e .[$BASE_EXTRAS,$AXOLOTL_EXTRAS] $AXOLOTL_ARGS; \
+    else \
+        pip install --no-build-isolation -e .[$BASE_EXTRAS] $AXOLOTL_ARGS; \
+    fi && \
+    python scripts/cutcrossentropy_install.py | sh && \
+    pip install pytest && \
+    pip cache purge
 
-RUN python scripts/unsloth_install.py | sh
-RUN python scripts/cutcrossentropy_install.py | sh
-
-# So we can test the Docker image
-RUN pip install pytest
-
-# fix so that git fetch/pull from remote works
+# fix so that git fetch/pull from remote works with shallow clone
 RUN git config remote.origin.fetch "+refs/heads/*:refs/remotes/origin/*" && \
-    git config --get remote.origin.fetch
+    git config --get remote.origin.fetch && \
+    git config --global credential.helper store
 
-# helper for huggingface-login cli
-RUN git config --global credential.helper store
+COPY .axolotl-complete.bash /root/.axolotl-complete.bash
+RUN chmod +x /root/.axolotl-complete.bash && \
+    echo 'source /root/.axolotl-complete.bash' >> ~/.bashrc

docker/Dockerfile-base

@@ -2,38 +2,59 @@ ARG CUDA_VERSION="11.8.0"
 ARG CUDNN_VERSION="8"
 ARG UBUNTU_VERSION="22.04"
 ARG MAX_JOBS=4
+ARG TARGETARCH
 
 FROM nvidia/cuda:$CUDA_VERSION-cudnn$CUDNN_VERSION-devel-ubuntu$UBUNTU_VERSION AS base-builder
 
 ENV PATH="/root/miniconda3/bin:${PATH}"
 
-ARG PYTHON_VERSION="3.10"
+ARG TARGETARCH
+ARG PYTHON_VERSION="3.11"
 ARG PYTORCH_VERSION="2.1.2"
-ARG CUDA="118"
+ARG CUDA="128"
 ARG TORCH_CUDA_ARCH_LIST="7.0 7.5 8.0 8.6 9.0+PTX"
 
 ENV PYTHON_VERSION=$PYTHON_VERSION
 ENV TORCH_CUDA_ARCH_LIST=$TORCH_CUDA_ARCH_LIST
 
 RUN apt-get update \
-    && apt-get install -y wget git build-essential ninja-build git-lfs libaio-dev pkg-config && rm -rf /var/lib/apt/lists/* \
-    && wget \
-    https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh \
+    && apt-get install -y --no-install-recommends \
+        wget git build-essential ninja-build git-lfs libaio-dev pkg-config \
+        ibverbs-providers ibverbs-utils infiniband-diags  \
+        librdmacm-dev librdmacm1 rdmacm-utils slurm-wlm \
+    && rm -rf /var/cache/apt/archives \
+    && rm -rf /var/lib/apt/lists/* \
+    && if [ "$TARGETARCH" = "amd64" ]; then \
+        MINICONDA_ARCH="x86_64"; \
+    elif [ "$TARGETARCH" = "arm64" ]; then \
+        MINICONDA_ARCH="aarch64"; \
+    else \
+        echo "Unsupported architecture: $TARGETARCH"; exit 1; \
+    fi \
+    && wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-${MINICONDA_ARCH}.sh \
     && mkdir /root/.conda \
-    && bash Miniconda3-latest-Linux-x86_64.sh -b \
-    && rm -f Miniconda3-latest-Linux-x86_64.sh \
+    && bash Miniconda3-latest-Linux-${MINICONDA_ARCH}.sh -b \
+    && rm -f Miniconda3-latest-Linux-${MINICONDA_ARCH}.sh \
+    && conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/main \
+    && conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/r \
     && conda create -n "py${PYTHON_VERSION}" python="${PYTHON_VERSION}"
 
 ENV PATH="/root/miniconda3/envs/py${PYTHON_VERSION}/bin:${PATH}"
 
 WORKDIR /workspace
 
-RUN python3 -m pip install --upgrade pip && pip3 install packaging && \
-    python3 -m pip install --no-cache-dir -U torch==${PYTORCH_VERSION}+cu${CUDA} --extra-index-url https://download.pytorch.org/whl/cu$CUDA && \
-    python3 -m pip install --no-cache-dir "causal_conv1d @ git+https://github.com/Dao-AILab/causal-conv1d.git@main" && \
-    python3 -m pip install --no-cache-dir "mamba_ssm @ git+https://github.com/state-spaces/mamba.git@main"
+RUN python3 -m pip install --upgrade pip && pip3 install -U packaging==26.0 setuptools==75.8.0 wheel psutil && \
+    python3 -m pip install --no-cache-dir -U torch==${PYTORCH_VERSION}+cu${CUDA} torchvision --extra-index-url https://download.pytorch.org/whl/cu$CUDA && \
+    python3 -m pip cache purge
+
+RUN if [ "$CUDA" != "130" ] ; then \
+        CAUSAL_CONV1D_FORCE_CXX11_ABI=TRUE CAUSAL_CONV1D_FORCE_BUILD=TRUE python3 -m pip install --no-cache-dir "causal_conv1d @ git+https://github.com/Dao-AILab/causal-conv1d.git@v1.5.4"; \
+        python3 -m pip install --no-cache-dir "mamba_ssm @ git+https://github.com/state-spaces/mamba.git@main"; \
+        python3 -m pip cache purge; \
+    fi
 
 RUN git lfs install --skip-repo && \
     pip3 install awscli && \
     # The base image ships with `pydantic==1.8.2` which is not working
-    pip3 install -U --no-cache-dir pydantic==1.10.10
+    pip3 install -U --no-cache-dir pydantic==1.10.10 && \
+    pip3 cache purge

docker/Dockerfile-base-next

@@ -0,0 +1,38 @@
+ARG CUDA_VERSION="12.8.1"
+ARG CUDNN_VERSION="8"
+ARG UBUNTU_VERSION="22.04"
+ARG MAX_JOBS=4
+
+FROM nvidia/cuda:$CUDA_VERSION-cudnn$CUDNN_VERSION-devel-ubuntu$UBUNTU_VERSION AS base-builder
+
+ENV PATH="/root/miniconda3/bin:${PATH}"
+
+ARG PYTHON_VERSION="3.11"
+ARG PYTORCH_VERSION="next"
+ARG CUDA="128"
+ARG TORCH_CUDA_ARCH_LIST="7.0 7.5 8.0 8.6 9.0+PTX"
+
+ENV PYTHON_VERSION=$PYTHON_VERSION
+ENV TORCH_CUDA_ARCH_LIST=$TORCH_CUDA_ARCH_LIST
+
+RUN apt-get update \
+    && apt-get install -y wget git build-essential ninja-build git-lfs libaio-dev pkg-config && rm -rf /var/lib/apt/lists/* \
+    && wget \
+    https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh \
+    && mkdir /root/.conda \
+    && bash Miniconda3-latest-Linux-x86_64.sh -b \
+    && rm -f Miniconda3-latest-Linux-x86_64.sh \
+    && conda create -n "py${PYTHON_VERSION}" python="${PYTHON_VERSION}"
+
+ENV PATH="/root/miniconda3/envs/py${PYTHON_VERSION}/bin:${PATH}"
+
+WORKDIR /workspace
+
+RUN python3 -m pip install --upgrade pip && pip3 install packaging && \
+    python3 -m pip install --no-cache-dir -U torch==2.7.1 --extra-index-url https://download.pytorch.org/whl/test/cu$CUDA && \
+    python3 -m pip install --no-cache-dir "causal_conv1d @ git+https://github.com/Dao-AILab/causal-conv1d.git@main" && \
+    python3 -m pip install --no-cache-dir "mamba_ssm @ git+https://github.com/state-spaces/mamba.git@main"
+
+RUN git lfs install --skip-repo && \
+    pip3 install awscli && \
+    pip3 install -U --no-cache-dir pydantic==2.10.6

docker/Dockerfile-base-nightly

@@ -0,0 +1,43 @@
+ARG CUDA_VERSION="12.8.1"
+ARG CUDNN_VERSION="8"
+ARG UBUNTU_VERSION="22.04"
+ARG MAX_JOBS=4
+
+FROM nvidia/cuda:$CUDA_VERSION-cudnn$CUDNN_VERSION-devel-ubuntu$UBUNTU_VERSION AS base-builder
+
+ENV PATH="/root/miniconda3/bin:${PATH}"
+
+ARG PYTHON_VERSION="3.11"
+ARG PYTORCH_VERSION="nightly"
+ARG CUDA="128"
+ARG TORCH_CUDA_ARCH_LIST="7.0 7.5 8.0 8.6 9.0+PTX"
+
+ENV PYTHON_VERSION=$PYTHON_VERSION
+ENV TORCH_CUDA_ARCH_LIST=$TORCH_CUDA_ARCH_LIST
+
+RUN apt-get update \
+    && apt-get install -y wget git build-essential ninja-build git-lfs libaio-dev pkg-config && rm -rf /var/lib/apt/lists/* \
+    && wget \
+    https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh \
+    && mkdir /root/.conda \
+    && bash Miniconda3-latest-Linux-x86_64.sh -b \
+    && rm -f Miniconda3-latest-Linux-x86_64.sh \
+    && conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/main \
+    && conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/r \
+    && conda create -n "py${PYTHON_VERSION}" python="${PYTHON_VERSION}"
+
+ENV PATH="/root/miniconda3/envs/py${PYTHON_VERSION}/bin:${PATH}"
+
+WORKDIR /workspace
+
+RUN python3 -m pip install --upgrade pip && pip3 install -U packaging==26.0 setuptools==75.8.0 wheel && \
+    python3 -m pip install --no-cache-dir -U torch --extra-index-url https://download.pytorch.org/whl/nightly/cu$CUDA && \
+    python3 -m pip install --no-cache-dir "causal_conv1d @ git+https://github.com/Dao-AILab/causal-conv1d.git@main" && \
+    python3 -m pip install --no-cache-dir "mamba_ssm @ git+https://github.com/state-spaces/mamba.git@main" && \
+    python3 -m pip cache purge
+
+RUN git lfs install --skip-repo && \
+    pip3 install awscli && \
+    # The base image ships with `pydantic==1.8.2` which is not working
+    pip3 install -U --no-cache-dir pydantic==1.10.10 && \
+    pip3 cache purge

docker/Dockerfile-cloud

@@ -14,7 +14,10 @@ COPY scripts/motd /etc/motd
 
 RUN pip install jupyterlab notebook ipywidgets && \
     jupyter lab clean
-RUN apt install --yes --no-install-recommends openssh-server tmux iproute2 nvtop && \
+RUN apt update && \
+    apt install --yes --no-install-recommends openssh-server tmux iproute2 nvtop && \
+    rm -rf /var/cache/apt/archives && \
+    rm -rf /var/lib/apt/lists/* && \
     mkdir -p ~/.ssh && \
     chmod 700 ~/.ssh && \
     printf "\n[[ -z \"\$TMUX\"  ]] && { tmux attach-session -t ssh_tmux || tmux new-session -s ssh_tmux; exit; }\n" >> ~/.bashrc && \

docker/Dockerfile-cloud-no-tmux

@@ -9,13 +9,15 @@ ENV HF_HUB_ENABLE_HF_TRANSFER="1"
 EXPOSE 8888
 EXPOSE 22
 
-COPY scripts/cloud-entrypoint-term.sh /root/cloud-entrypoint.sh
+COPY scripts/cloud-entrypoint.sh /root/cloud-entrypoint.sh
 COPY scripts/motd /etc/motd
 
 RUN pip install jupyterlab notebook ipywidgets && \
     jupyter lab clean
-RUN apt install --yes --no-install-recommends openssh-server tmux sudo && \
-    pip3 install -U --no-cache-dir grpcio ray[default]==2.9.3 && \
+RUN apt update && \
+    apt install --yes --no-install-recommends openssh-server tmux iproute2 nvtop ibverbs-providers ibverbs-utils infiniband-diags librdmacm-dev librdmacm1 rdmacm-utils slurm-wlm && \
+    rm -rf /var/cache/apt/archives && \
+    rm -rf /var/lib/apt/lists/* && \
     mkdir -p ~/.ssh && \
     chmod 700 ~/.ssh && \
     printf "[ ! -z \"\$TERM\" -a -r /etc/motd ] && cat /etc/motd\n" >> ~/.bashrc && \

docker/Dockerfile-cloud-uv

@@ -0,0 +1,31 @@
+ARG BASE_TAG=main
+FROM axolotlai/axolotl-uv:$BASE_TAG
+
+ENV HF_DATASETS_CACHE="/workspace/data/huggingface-cache/datasets"
+ENV HF_HUB_CACHE="/workspace/data/huggingface-cache/hub"
+ENV HF_HOME="/workspace/data/huggingface-cache/hub"
+ENV HF_HUB_ENABLE_HF_TRANSFER="1"
+
+EXPOSE 8888
+EXPOSE 22
+
+COPY scripts/cloud-entrypoint.sh /root/cloud-entrypoint.sh
+COPY scripts/motd /etc/motd
+
+RUN uv pip install jupyterlab notebook ipywidgets && \
+    jupyter lab clean
+RUN apt update && \
+    apt install --yes --no-install-recommends openssh-server tmux iproute2 nvtop && \
+    rm -rf /var/cache/apt/archives && \
+    rm -rf /var/lib/apt/lists/* && \
+    mkdir -p ~/.ssh && \
+    chmod 700 ~/.ssh && \
+    printf "\n[[ -z \"\$TMUX\"  ]] && { tmux attach-session -t ssh_tmux || tmux new-session -s ssh_tmux; exit; }\n" >> ~/.bashrc && \
+    printf "[ ! -z \"\$TERM\" -a -r /etc/motd ] && cat /etc/motd\n" >> ~/.bashrc && \
+    printf "source /workspace/axolotl-venv/bin/activate\n" >> ~/.bashrc && \
+    chmod +x /workspace/axolotl/scripts/cloud-entrypoint.sh && \
+    chmod +x /root/cloud-entrypoint.sh && \
+    echo 'set-option -g history-limit 5000' >> ~/.tmux.conf
+
+ENTRYPOINT ["/root/cloud-entrypoint.sh"]
+CMD ["sleep", "infinity"]

docker/Dockerfile-tests

@@ -24,9 +24,9 @@ RUN git fetch origin +$GITHUB_REF && \
 
 # If AXOLOTL_EXTRAS is set, append it in brackets
 RUN if [ "$AXOLOTL_EXTRAS" != "" ] ; then \
-        pip install --no-build-isolation -e .[deepspeed,flash-attn,mamba-ssm,$AXOLOTL_EXTRAS] $AXOLOTL_ARGS; \
+        pip install --no-build-isolation -e .[deepspeed,mamba-ssm,$AXOLOTL_EXTRAS] $AXOLOTL_ARGS; \
     else \
-        pip install --no-build-isolation -e .[deepspeed,flash-attn,mamba-ssm] $AXOLOTL_ARGS; \
+        pip install --no-build-isolation -e .[deepspeed,mamba-ssm] $AXOLOTL_ARGS; \
     fi
 
 # So we can test the Docker image

docker/Dockerfile-uv

@@ -0,0 +1,47 @@
+ARG BASE_TAG=main-base
+FROM axolotlai/axolotl-base-uv:$BASE_TAG
+
+ARG TORCH_CUDA_ARCH_LIST="7.0 7.5 8.0 8.6+PTX"
+ARG AXOLOTL_EXTRAS=""
+ARG AXOLOTL_ARGS=""
+ARG CUDA="118"
+ARG PYTORCH_VERSION="2.1.2"
+ARG TARGETARCH
+
+ENV PYTORCH_VERSION=$PYTORCH_VERSION
+
+RUN apt-get update && \
+    apt-get install -y --allow-change-held-packages vim curl nano libnccl2 libnccl-dev rsync s3fs && \
+    rm -rf /var/cache/apt/archives && \
+    rm -rf /var/lib/apt/lists/*
+
+WORKDIR /workspace
+
+RUN git clone --depth=1 https://github.com/axolotl-ai-cloud/axolotl.git
+
+WORKDIR /workspace/axolotl
+
+# If AXOLOTL_EXTRAS is set, append it in brackets; don't install deepspeed with arm64
+RUN uv pip uninstall causal_conv1d
+RUN if [ "$TARGETARCH" = "arm64" ]; then \
+        BASE_EXTRAS="optimizers,ray"; \
+    else \
+        BASE_EXTRAS="deepspeed,optimizers,ray"; \
+    fi && \
+    if [ "$AXOLOTL_EXTRAS" != "" ]; then \
+        uv pip install --no-build-isolation -e .[$BASE_EXTRAS,$AXOLOTL_EXTRAS] $AXOLOTL_ARGS; \
+    else \
+        uv pip install --no-build-isolation -e .[$BASE_EXTRAS] $AXOLOTL_ARGS; \
+    fi && \
+    python scripts/cutcrossentropy_install.py --uv | sh && \
+    uv pip install pytest && \
+    uv cache clean
+
+# fix so that git fetch/pull from remote works with shallow clone
+RUN git config remote.origin.fetch "+refs/heads/*:refs/remotes/origin/*" && \
+    git config --get remote.origin.fetch && \
+    git config --global credential.helper store
+
+COPY .axolotl-complete.bash /root/.axolotl-complete.bash
+RUN chmod +x /root/.axolotl-complete.bash && \
+    echo 'source /root/.axolotl-complete.bash' >> ~/.bashrc

docker/Dockerfile-uv-base

@@ -0,0 +1,40 @@
+ARG CUDA_VERSION="12.6.3"
+ARG CUDNN_VERSION=""
+ARG UBUNTU_VERSION="22.04"
+ARG MAX_JOBS=4
+ARG TARGETARCH
+
+FROM nvidia/cuda:$CUDA_VERSION-cudnn$CUDNN_VERSION-devel-ubuntu$UBUNTU_VERSION AS base-builder
+
+ARG TARGETARCH
+ARG PYTHON_VERSION="3.11"
+ARG PYTORCH_VERSION="2.6.0"
+ARG CUDA="126"
+ARG TORCH_CUDA_ARCH_LIST="7.0 7.5 8.0 8.6 9.0+PTX"
+
+ENV PYTHON_VERSION=$PYTHON_VERSION
+ENV TORCH_CUDA_ARCH_LIST=$TORCH_CUDA_ARCH_LIST
+ENV UV_TORCH_BACKEND="cu${CUDA}"
+
+RUN apt-get update \
+    && apt-get install -y wget git build-essential ninja-build git-lfs libaio-dev pkg-config curl && rm -rf /var/lib/apt/lists/* \
+    && git lfs install --skip-repo \
+    && curl -LsSf https://astral.sh/uv/install.sh | sh
+
+ENV PATH="/root/.local/bin:${PATH}"
+
+RUN uv python install ${PYTHON_VERSION}
+
+WORKDIR /workspace
+
+RUN uv venv --no-project --relocatable axolotl-venv
+
+ENV PATH="/workspace/axolotl-venv/bin:${PATH}"
+
+RUN uv pip install packaging setuptools wheel psutil \
+    && uv pip install torch==${PYTORCH_VERSION} torchvision \
+    && uv pip install awscli pydantic
+
+RUN if [ "$TARGETARCH" = "amd64" ]; then \
+        MAMBA_SKIP_CUDA_BUILD=TRUE CAUSAL_CONV1D_SKIP_CUDA_BUILD=TRUE uv pip install --no-build-isolation mamba_ssm causal_conv1d; \
+    fi

docs/.gitignore

@@ -1,2 +1,7 @@
 /.quarto/
 _site/
+/api/*.qmd
+/api/*.html
+config-reference.qmd
+models/**/*.qmd
+models/**/*.html

docs/1_58bit_finetuning.qmd

@@ -0,0 +1,70 @@
+---
+title: "1.58-bit Finetuning"
+back-to-top-navigation: true
+toc: true
+toc-expand: 2
+toc-depth: 4
+---
+
+## Overview
+
+1.58-bit finetuning allows you to finetune BitNet models when their prequantized weights are provided. In theory, it will be possible to fine-tune any LLM in 1.58bit format but the performance degradation will be dramatic.
+
+Axolotl supports 1.58-bit finetuning via the [`onebitllms`](https://github.com/tiiuae/onebitllms) library, which replaces standard linear layers with BitNet-compatible counterparts ready to use for training.
+
+::: {.callout-note}
+LoRA is not supported for BitNet models
+:::
+
+## Installation
+
+Install the `onebitllms` package before using this feature:
+
+```bash
+uv pip install onebitllms
+```
+
+Or from source:
+
+```bash
+uv pip install git+https://github.com/tiiuae/onebitllms
+```
+
+## Supported models
+
+For now, only `Falcon-E` series of models are supported. Make sure to use their `-prequantized` version:
+
+```bash
+tiiuae/Falcon-E-3B-Base-prequantized
+tiiuae/Falcon-E-1B-Base-prequantized
+```
+
+In theory, any other model would 'work' but the performance degradation will be huge. This remains an area of exploration.
+
+## Configuration
+
+To enable 1.58-bit finetuning, set the following in your configuration file:
+
+```yaml
+base_model: tiiuae/Falcon-E-3B-Base-prequantized  # A BitNet-compatible model
+
+use_onebitllms: true
+```
+
+::: {.callout-note}
+For BitNet models, it is recommended to use a higher learning rate than classic models (usually in the order of magnitude of 10x).
+:::
+
+## Considerations after training
+
+Once your model has been trained with 1.58bit fine-tuning, you can convert the trained model in ternary format using the `onebitllms` CLI:
+
+```bash
+onebitllms quantize_to_1bit INPUT_PATH OUTPUT_PATH
+```
+
+After that, you can use supported packages such as `llama.cpp` or Apple MLX package to run the trained model.
+
+## Example Configuration
+
+You can find example configurations in `examples/falcon-e` which contain one configuration for SFT and one configuration for DPO.

docs/agents/grpo.md

@@ -0,0 +1,71 @@
+# GRPO — Agent Reference
+
+Online RL with verifiable reward functions. For full config reference, async features, and scaling, see [grpo.qmd](../grpo.qmd). For vLLM setup, see [vllm_serving.qmd](../vllm_serving.qmd).
+
+## Architecture
+
+```
+Terminal 1 (GPU 0)                    Terminal 2 (GPU 1)
+┌──────────────────────┐              ┌──────────────────────────────────┐
+│  vLLM Server         │   HTTP       │  Trainer                         │
+│  Serves base model   │◄────────────►│  1. Send prompts to vLLM         │
+│  + LoRA adapter      │  /generate   │  2. Score completions (rewards)  │
+│                      │  /set_lora   │  3. Compute advantages           │
+│  Punica kernels for  │              │  4. PPO-clip gradient update     │
+│  LoRA inference      │              │  5. Sync LoRA weights to vLLM    │
+└──────────────────────┘              └──────────────────────────────────┘
+```
+
+## Components Required
+
+1. A YAML config with `rl: grpo`
+2. A reward module (Python file with reward functions)
+3. A running vLLM server (`axolotl vllm-serve config.yaml`)
+
+## Reward Function Signature
+
+```python
+def my_reward(completions, **kwargs) -> list[float]:
+    # completions[i][0]["content"] = text of i-th completion
+    # **kwargs contains dataset columns not removed by transform
+    return [score_for_each_completion]
+```
+
+Multiple rewards: `reward_funcs: [r1, r2]` with `reward_weights: [1.0, 0.5]`.
+
+## Key Async Features
+
+| Feature | Config | Purpose |
+|---------|--------|---------|
+| Async prefetch | `async_prefetch: true` | Overlap generation with training |
+| LoRA sync | `vllm_lora_sync: true` | Fast adapter sync via filesystem |
+| Streaming scoring | `streaming_partial_batch: true` | Score one group at a time |
+| Zero-adv skip | `skip_zero_advantage_batches: true` | Skip batches with no learning signal |
+| Replay buffer | `replay_buffer_size: 100` | Cache high-signal groups |
+| IS correction | `vllm_importance_sampling_correction: true` | Fix off-policy distribution shift |
+
+## Health Checks
+
+- `rewards/*/mean` > 0.15 within 20 steps (else: test reward function standalone)
+- `reward_std` > 0 on most steps (else: no learning signal)
+- `entropy` 0.05-0.5 (< 0.01 = mode collapse)
+- `grad_norm` 0.001-1.0 (> 10 = unstable, 0.0 = zero-advantage skip)
+
+See [training_stability.qmd](../training_stability.qmd) for detailed diagnostics.
+
+## File Map
+
+```
+src/axolotl/
+  cli/train.py                     # Entry point
+  cli/vllm_serve.py                # Entry point for vLLM server
+  core/trainers/grpo/
+    trainer.py                     # AxolotlGRPOTrainer
+    sampler.py                     # Sampling utilities
+  core/builders/rl.py              # HFRLTrainerBuilder — routes rl type → trainer
+  scripts/vllm_serve_lora.py       # vLLM serve script with LoRA sync support
+  utils/schemas/trl.py             # TRL config schema (all trl: options)
+
+docs/grpo.qmd                     # Full user docs: async, rewards, scaling, config reference
+docs/vllm_serving.qmd             # vLLM server modes, LoRA sync, weight sync
+```

docs/agents/model_architectures.md

@@ -0,0 +1,198 @@
+# Model Architectures — Agent Reference
+
+Model-specific quirks, required settings, and known issues. Check this before debugging training failures on specific model families.
+
+## VLM (Vision Language Model) Quick Start
+
+All VLM configs require these four lines:
+```yaml
+processor_type: AutoProcessor
+skip_prepare_dataset: true
+remove_unused_columns: false
+sample_packing: false
+```
+
+Decision tree for VLM config:
+```text
+Is the model multimodal (has vision/audio encoder)?
+  ├─ YES: Add `freeze_mm_modules: true` if training text only
+  │       Add `chat_template: <model_template>` (e.g. gemma4, qwen3_5, gemma3)
+  │       LoRA: use regex `lora_target_modules` to restrict to language model
+  └─ NO: Train as a regular text model
+
+Is the model MoE (e.g. Gemma4 26B-A4B, Qwen3.5 35B-A3B)?
+  ├─ YES: Add `lora_target_parameters` for expert LoRA
+  │       Consider ScatterMoE kernels (see Plugins section)
+  └─ NO: Standard LoRA config
+```
+
+## Plugins & Optimizations
+
+### Cut Cross Entropy (CCE)
+
+Computes loss from hidden states + lm_head weight without materializing the full logits tensor, saving significant VRAM. Install if not already present:
+
+```bash
+uv pip install "cut-cross-entropy[transformers] @ git+https://github.com/axolotl-ai-cloud/ml-cross-entropy.git@main"
+```
+
+```yaml
+plugins:
+  - axolotl.integrations.cut_cross_entropy.CutCrossEntropyPlugin
+```
+
+### ScatterMoE Kernels
+
+Fuses expert + LoRA computation into a single kernel for MoE models. Significant speedup for models with many experts.
+
+```yaml
+plugins:
+  - axolotl.integrations.kernels.KernelsPlugin
+use_kernels: true
+use_scattermoe: true
+experts_implementation: scattermoe
+
+# Expert LoRA targets (3D parameter tensors, not nn.Linear):
+lora_target_parameters:
+  - experts.gate_up_proj
+  - experts.down_proj
+```
+
+Supported: Gemma4 (`gemma4_text`), Mixtral, Qwen MoE variants. The plugin auto-detects model type and routing function. Without ScatterMoE, expert LoRA still works but runs base expert matmul and LoRA as separate operations.
+
+## Gemma 4
+
+**Models**: `google/gemma-4-26B-A4B` (MoE), `google/gemma-4-31B` (dense), `google/gemma-4-E2B`, `google/gemma-4-E4B`
+
+**Architecture**: Multimodal wrapper (`Gemma4ForConditionalGeneration`) over a text backbone (`Gemma4TextModel`), with optional vision/audio encoders. All Gemma4 HF repos have `model_type: "gemma4"` — even text-only variants load as multimodal with a vision tower.
+
+### Required settings
+
+```yaml
+# Always needed for Gemma4:
+freeze_mm_modules: true          # Freeze vision/audio encoders for text-only training
+gradient_checkpointing_kwargs:
+  use_reentrant: false           # Shared per-layer norms cause "marked ready twice" with reentrant
+
+# LoRA target — restrict to language model only (DO NOT use lora_target_linear: true):
+lora_target_modules: 'model.language_model.layers.[\d]+.(_checkpoint_wrapped_module.)?(mlp|self_attn).(up|down|gate|q|k|v|o)_proj'
+```
+
+### Auto-detection
+
+Axolotl auto-detects Gemma4 and applies:
+- `use_reentrant: false` for gradient checkpointing
+- `ddp_find_unused_parameters: true` for DDP (skipped when `activation_offloading: true`)
+
+### Multi-GPU
+
+| Strategy | Works? | Notes |
+|----------|--------|-------|
+| DDP | Yes | Auto-sets `ddp_find_unused_parameters=True` |
+| DDP + activation_offloading | Yes | `find_unused_parameters` is skipped (conflicts with checkpoint wrappers) |
+| FSDP1 | No | OOM during dequantization/sharding with QLoRA |
+| FSDP2 | Yes | Use `Gemma4TextDecoderLayer` (not `Gemma4DecoderLayer`) as wrap class |
+| FSDP2 + activation_offloading | Yes | Lowest VRAM (~26 GiB/GPU for 26B-A4B) |
+
+FSDP2 config:
+```yaml
+fsdp:
+  - full_shard
+  - auto_wrap
+fsdp_config:
+  fsdp_version: 2
+  fsdp_auto_wrap_policy: TRANSFORMER_BASED_WRAP
+  fsdp_transformer_layer_cls_to_wrap: Gemma4TextDecoderLayer
+```
+
+### MoE (26B-A4B)
+
+- `enable_moe_block: true`, 256 experts, top-k routing
+- No separate `SparseMoeBlock` — MoE is embedded in each decoder layer
+- Expert LoRA targets 3D parameter tensors:
+  ```yaml
+  lora_target_parameters:
+    - experts.gate_up_proj
+    - experts.down_proj
+  ```
+- ScatterMoE kernel acceleration:
+  ```yaml
+  plugins:
+    - axolotl.integrations.kernels.KernelsPlugin
+  use_kernels: true
+  use_scattermoe: true
+  experts_implementation: scattermoe
+  ```
+
+### VLM (Vision) Training
+
+All Gemma4 models load as `Gemma4ForConditionalGeneration` with a vision tower. No custom `ProcessingStrategy` needed — the base class auto-detects the image token.
+
+```yaml
+base_model: google/gemma-4-E2B-it   # or E4B-it, 26B-A4B
+processor_type: AutoProcessor
+freeze_mm_modules: true
+chat_template: gemma4
+
+skip_prepare_dataset: true
+remove_unused_columns: false
+sample_packing: false
+```
+
+A starting VLM loss of ~8-15 is typical. In most runs, loss converges below 1.0 within ~30-50 steps, though results may vary across configurations.
+
+For the 26B-A4B MoE variant with ScatterMoE + expert LoRA + CCE, add:
+```yaml
+plugins:
+  - axolotl.integrations.cut_cross_entropy.CutCrossEntropyPlugin
+  - axolotl.integrations.kernels.KernelsPlugin
+use_kernels: true
+use_scattermoe: true
+experts_implementation: scattermoe
+lora_target_parameters:
+  - experts.gate_up_proj
+  - experts.down_proj
+```
+
+### Common issues
+
+| Symptom | Cause | Fix |
+|---------|-------|-----|
+| `mm_token_type_ids is required` in DDP | `model.config` not accessible through DDP wrapper | Already fixed — `unwrap_model()` in `compute_loss` and `prediction_step` |
+| `marked a variable ready twice` in DDP | `ddp_find_unused_parameters=True` + activation_offloading checkpoint wrappers | Auto-handled — `find_unused_parameters` is skipped when `activation_offloading: true` |
+| Loss ~12 instead of ~0.5 | Using `lora_target_linear: true` (applies LoRA to vision/audio modules) | Use the regex `lora_target_modules` pattern instead |
+| FSDP2 `Could not find Gemma4AudioLayer` | Auto-wrap detects `_no_split_modules` including audio layers that don't exist | Explicitly set `fsdp_transformer_layer_cls_to_wrap: Gemma4TextDecoderLayer` |
+| `Gemma4ClippableLinear not supported` by PEFT | Vision tower uses a non-standard linear wrapper | Axolotl patches this automatically via `_patch_peft_clippable_linear()` |
+
+### E2B/E4B dense models
+
+These have `hidden_size_per_layer_input: 256` (per-layer input embeddings) and `attention_k_eq_v: False`. Known issue: loss starts higher than expected (~12 vs ~0.5 for 26B). Root cause under investigation — may be related to the per-layer input mechanism or the `Gemma4ForConditionalGeneration` loss computation.
+
+## Gemma 3
+
+**Models**: `google/gemma-3-*`
+
+- `ddp_find_unused_parameters: true` needed (multimodal unused params)
+- `use_reentrant: false` recommended
+- Attention mask must be dropped for sample packing (handled automatically)
+- Multi-GPU test currently skipped (`tests/e2e/multigpu/test_gemma3.py`)
+
+## Qwen 3.5 MoE
+
+**Models**: `Qwen/Qwen3.5-35B-A3B`
+
+- Hybrid architecture: DeltaNet linear attention (30 layers) + full attention (10 layers)
+- 256 experts, 8 active per token
+- Known weight scale drift in late DeltaNet layers (36-38) due to AdamW + rare expert interaction
+- Fix: `normalize_weight_scales` config to detect and rescale outliers:
+  ```yaml
+  normalize_weight_scales:
+    - name_pattern: 'linear_attn\.conv1d\.weight'
+      threshold: 1.3
+  ```
+
+## General MoE Notes
+
+- `lora_target_linear: true` with multimodal MoE models will apply LoRA to ALL linear modules including vision/audio encoders — use regex `lora_target_modules` to restrict to language model only
+- Rare experts get larger effective learning rate from AdamW (small second-moment estimates) — can cause weight drift in recurrent/SSM components. Use `normalize_weight_scales` with `dry_run: true` to detect.
+- For ScatterMoE kernel support, set `experts_implementation: scattermoe` and add the KernelsPlugin

docs/agents/new_model_support.md

@@ -0,0 +1,181 @@
+# New Model Support — Agent Reference
+
+Guide for debugging and adding support for new model architectures in axolotl. Based on lessons learned from Gemma4, Gemma3, Qwen2-VL, and other multimodal/MoE models.
+
+## Quick Validation Checklist
+
+When testing a new model, run through these checks in order:
+
+1. **Does the model load?** `axolotl preprocess config.yaml` — catches config schema errors
+2. **Does LoRA apply?** Check for "Unsupported layer type" warnings from PEFT
+3. **Is the initial loss sane?** First-step loss for a pretrained model should be 0.5–2.0 for SFT
+4. **Does sample packing work?** Compare loss with `sample_packing: true` vs `false` — should be similar
+5. **Is CCE active?** Check for "Applying Cut Cross Entropy" log and verify peak VRAM is lower
+
+## Loss Debugging
+
+### Expected initial loss
+A pretrained model doing SFT should start with loss roughly in the 0.5–2.0 range. If loss starts above 3.0, something is wrong. If it's near `log(vocab_size)` (≈ 12 for 262K vocab), the model is predicting at random — attention masking or model weights are broken.
+
+### Direct comparison technique
+The fastest way to isolate a loss issue — bypass the trainer entirely:
+
+```python
+# Load model via axolotl's pipeline (applies all patches)
+from axolotl.cli.config import load_cfg
+from axolotl.utils.config import normalize_config, prepare_plugins
+from axolotl.loaders.tokenizer import load_tokenizer
+from axolotl.loaders.model import ModelLoader
+
+cfg = load_cfg("your_config.yaml")
+normalize_config(cfg)
+prepare_plugins(cfg)
+tokenizer = load_tokenizer(cfg)
+model, _ = ModelLoader(cfg, tokenizer).load()
+
+# Forward pass on preprocessed data
+model.train()
+out = model(input_ids, labels=labels)
+print(f"Direct loss: {out.loss.item()}")  # Compare to trainer's reported loss
+```
+
+If direct loss is correct (~1.0) but trainer reports 3–4x higher, check `model_accepts_loss_kwargs` (see below).
+
+### `model_accepts_loss_kwargs` inflation
+HF Trainer checks if the model's `forward()` has `**kwargs` and sets `model_accepts_loss_kwargs=True`. This changes loss normalization: the trainer does NOT divide loss by `gradient_accumulation_steps` before logging. The gradient is correct — only the logged loss is inflated.
+
+**Symptom**: Logged loss ≈ actual_loss × gradient_accumulation_steps.
+
+**Which models are affected**: Any model with `**kwargs` in forward (common in multimodal models for extra inputs like `mm_token_type_ids`, `pixel_values`, etc.).
+
+**Fix location**: `src/axolotl/core/trainers/base.py` `__init__()` — after `super().__init__()`, check if the unwrapped model actually has `num_items_in_batch` in its forward signature. If not, set `self.model_accepts_loss_kwargs = False`.
+
+## Multimodal Models (ForConditionalGeneration)
+
+Many recent models use `ForConditionalGeneration` as the top-level class, not `ForCausalLM`:
+- Gemma3 → `Gemma3ForConditionalGeneration`
+- Gemma4 → `Gemma4ForConditionalGeneration`
+- Qwen2-VL → `Qwen2VLForConditionalGeneration`
+- LLaVA → `LlavaForConditionalGeneration`
+
+### Why this matters
+
+| Component | Targets `ForCausalLM` | Needs `ForConditionalGeneration` |
+|-----------|----------------------|--------------------------------|
+| CCE patches | ✅ (default) | ❌ silently inactive if not patched |
+| PEFT LoRA | ✅ | May fail on custom layer types |
+| HF Trainer label handling | ✅ | May need extra inputs |
+
+### Required extra inputs
+Multimodal models require special inputs during training even for text-only data:
+
+| Model | Required Input | Value for Text-Only |
+|-------|---------------|-------------------|
+| Gemma4 | `mm_token_type_ids` | `torch.zeros_like(input_ids)` |
+| Gemma3 | `token_type_ids` | `torch.zeros_like(input_ids)` |
+
+Auto-inject in `compute_loss()` when not provided by the data collator. See `core/trainers/base.py`.
+
+### Custom layer types and PEFT
+Vision towers often use custom module wrappers that PEFT doesn't support:
+
+| Model | Custom Layer | Wraps | Fix |
+|-------|-------------|-------|-----|
+| Gemma4 | `Gemma4ClippableLinear` | `nn.Linear` | Redirect to `.linear` child |
+
+Fix location: `src/axolotl/loaders/adapter.py` `_patch_peft_clippable_linear()`.
+
+## Sample Packing
+
+### How packed sequence detection works (transformers ≥ 5.x)
+`transformers.masking_utils._preprocess_mask_arguments()` detects packed sequences from `position_ids` resets. But **only when `attention_mask is None`**:
+
+```python
+# From masking_utils.py:
+if position_ids is not None and attention_mask is None and past_key_values is None:
+    packed_sequence_mask = find_packed_sequence_indices(position_ids)
+```
+
+If the collator provides an all-ones `attention_mask`, packing detection is **skipped** and the model builds a single causal mask spanning all packed sequences → cross-sequence attention leakage → very high loss.
+
+### Fix for models using `create_causal_mask_mapping`
+For Gemma3, Gemma4, and similar models that use the new transformers masking system, remove `attention_mask` from inputs when sample packing is active:
+
+```python
+# In compute_loss():
+if (
+    self.args.sample_packing
+    and model_type in ("gemma4", "gemma3")
+    and "attention_mask" in inputs
+    and "position_ids" in inputs
+):
+    del inputs["attention_mask"]
+```
+
+Fix location: `src/axolotl/core/trainers/base.py` `compute_loss()`.
+
+### Models that DON'T need this fix
+Older models that use `_prepare_4d_causal_attention_mask` (Llama, Mistral, Qwen2, etc.) handle sample packing via axolotl's multipack attention monkeypatch instead. Only models using the new `create_causal_mask_mapping` / `create_causal_mask` masking system need the `attention_mask` removal.
+
+## Attention Backend Selection
+
+| Backend | Config | head_dim limit | torch_compile | Notes |
+|---------|--------|---------------|---------------|-------|
+| FA2 | `attn_implementation: flash_attention_2` | 256 | ✅ | Fastest when supported |
+| FA4 | auto with `attn_implementation: flash_attention_2` | 256 (SM90+) | ✅ | Auto-detected on H100+ |
+| SDPA | `attn_implementation: sdpa` | None | ✅ | Universal fallback |
+| flex | `attn_implementation: flex_attention` | None | ⚠️ Triton OOM for large head_dim | Good for variable head dims |
+| eager | `attn_implementation: eager` | None | ✅ | Slowest, always works |
+
+**Check model support**: Look at `_supports_flash_attn_2`, `_supports_flex_attn`, `_supports_sdpa` attributes on the model class.
+
+**head_dim gotcha**: The 256 limit is specific to flash-attn CUDA kernels, NOT PyTorch-level. SDPA and flex_attention both handle arbitrary head_dim. Models with `global_head_dim > 256` (Gemma4: 512) must use SDPA or flex.
+
+**flex + compile gotcha**: `torch_compile` with flex_attention can hit Triton shared memory OOM for large head_dim. Falls back to eager per-function (not a crash, but slower). Unsloth disables flex for Gemma4 for this reason.
+
+## Cut Cross Entropy (CCE)
+
+### How CCE patches work
+CCE replaces the model's `forward()` with a fused version that computes loss from hidden states + lm_head weight without materializing the full logits tensor. This saves ~`batch × seq_len × vocab_size × dtype_bytes` of VRAM.
+
+### Adding CCE for a new model
+1. Check if the model type is in `cut_cross_entropy.transformers.patch.PATCH_FNS`
+2. If not, axolotl's generic fallback (`integrations/cut_cross_entropy/__init__.py` `patch_llama_like()`) patches `{Prefix}ForCausalLM.forward` with `cce_forward`
+3. For multimodal models (`ForConditionalGeneration`), a model-specific patch is needed in `ml-cross-entropy` repo
+4. The multimodal `cce_forward` must accept all extra kwargs (pixel_values, mm_token_type_ids, etc.) and pop any that would conflict before calling `self.model()`
+
+### Common CCE pitfall
+If CCE appears active (log says "Applying Cut Cross Entropy") but peak VRAM doesn't decrease, check which class was patched. If the model loads as `ForConditionalGeneration` but CCE patched `ForCausalLM`, the patch is silently inactive.
+
+## MoE Models
+
+### Dense MLP vs MoE experts
+Some MoE models (e.g., Gemma4) have BOTH dense MLP layers and MoE expert layers at every decoder layer:
+- `gate_proj/up_proj/down_proj` → targets the **dense MLP** (`Gemma4TextMLP`)
+- `experts.gate_up_proj/experts.down_proj` → targets the **MoE experts** (`Gemma4TextExperts`)
+
+LoRA on the dense MLP works normally. Expert LoRA via `lora_target_parameters` requires PEFT support for the specific expert module type (may warn "Unsupported layer type").
+
+### ScatterMoE kernels
+`use_scattermoe: true` with `experts_implementation: scattermoe` registers fused expert kernels via transformers' `ExpertsInterface`. Significant speedup for MoE models. Requires the kernels plugin:
+```yaml
+plugins:
+  - axolotl.integrations.kernels.KernelsPlugin
+use_kernels: true
+use_scattermoe: true
+experts_implementation: scattermoe
+```
+
+## Where to Add Model-Specific Fixes
+
+| What | Where | Example |
+|------|-------|---------|
+| Missing forward inputs | `core/trainers/base.py` `compute_loss()` | mm_token_type_ids injection |
+| Attention mask fixes | `core/trainers/base.py` `compute_loss()` | Sample packing mask removal |
+| Loss logging fixes | `core/trainers/base.py` `__init__()` | model_accepts_loss_kwargs override |
+| PEFT/LoRA patches | `loaders/adapter.py` | ClippableLinear redirect |
+| Attention patches | `monkeypatch/attention/` | FA4 tuple fix |
+| Model-specific patches | `loaders/patch_manager.py` `_apply_model_specific_patches()` | Llama4, Kimi, NemotronH |
+| CCE patches | `ml-cross-entropy` repo `transformers/` | Per-model cce_forward |
+| Example configs | `examples/<model>/` | Validated YAML |
+| Config validation | `utils/schemas/validation.py` | Compatibility checks |

docs/agents/preference_tuning.md

@@ -0,0 +1,121 @@
+# Preference Learning (RLHF) — Agent Reference
+
+Reference for DPO, IPO, KTO, ORPO, and SimPO. For config templates and dataset format examples, see [rlhf.qmd](../rlhf.qmd). For GRPO, see [grpo.qmd](../grpo.qmd). For EBFT, see [ebft.qmd](../ebft.qmd).
+
+## Method Overview
+
+| Method | Data Requirement | Key Idea | Best For |
+|--------|-----------------|----------|----------|
+| **DPO** | Paired (chosen + rejected) | Implicit reward via preference pairs | General alignment, most common |
+| **IPO** | Paired (chosen + rejected) | DPO with different loss (avoids overfitting) | When DPO overfits |
+| **KTO** | Unpaired (completion + binary label) | Kahneman-Tversky loss, no pairs needed | When you only have thumbs-up/down |
+| **ORPO** | Paired (chosen + rejected) | Combined SFT + preference, no ref model | Single-stage alignment, saves VRAM |
+| **SimPO** | Paired (chosen + rejected) | Length-normalized, no ref model | Simple setup, length-robust |
+
+Default: start with DPO. All methods require `sample_packing: false`.
+
+## Architecture
+
+```
+┌──────────────┐   ┌───────────────┐   ┌───────────────┐
+│ Policy Model │   │ Reference     │   │ Preference    │
+│ (trainable)  │   │ Model (frozen)│   │ Dataset       │
+└──────┬───────┘   └──────┬────────┘   └──────┬────────┘
+       └──────────┬───────┘                    │
+                  v                            │
+       Forward pass on chosen + rejected <─────┘
+                  │
+       Preference Loss (DPO/IPO/KTO/...)
+                  │
+       Backprop + Update
+
+Exception: ORPO and SimPO do NOT use a reference model (~50% less VRAM).
+```
+
+No vLLM server needed (unlike GRPO). Offline RL with pre-collected preference data.
+
+## Method Selection
+
+1. Paired preference data (chosen + rejected)?
+   - Default → `rl: dpo`
+   - Overfitting → `rl: dpo, dpo_loss_type: ["ipo"]`
+   - VRAM-limited → `rl: orpo` (no ref model)
+   - Length-sensitive → `rl: simpo` (no ref model)
+2. Only binary labels (good/bad)? → `rl: kto`
+3. Single-stage training (no separate SFT)? → `rl: orpo`
+
+| | DPO | IPO | KTO | ORPO | SimPO |
+|---|---|---|---|---|---|
+| **Reference model** | Yes | Yes | Yes | No | No |
+| **VRAM overhead** | ~2x model | ~2x model | ~2x model | ~1x model | ~1x model |
+| **TRL trainer class** | DPOTrainer | DPOTrainer | KTOTrainer | ORPOTrainer | CPOTrainer |
+
+## Prompt Strategy Resolution
+
+The `type` field resolves to a Python function:
+
+```
+type: "chatml.intel"
+  → axolotl.prompt_strategies.dpo.chatml.intel(cfg, **kwargs)
+  → returns transform_fn(sample) → {"prompt", "chosen", "rejected"}
+
+type: "chat_template.default"
+  → axolotl.prompt_strategies.dpo.chat_template.default(cfg, dataset_idx, **kwargs)
+
+type: {"field_prompt": "prompt", ...}   (dict)
+  → axolotl.prompt_strategies.dpo.user_defined.default(...)
+```
+
+Module base: `axolotl.prompt_strategies.{rl_method}` — replace `dpo` with `kto` or `orpo`.
+
+## Healthy Training Indicators
+
+| Metric | Healthy Range | Problem |
+|--------|--------------|---------|
+| `train/loss` | Decreasing, 0.3-0.7 | Flat or increasing = broken data or too high LR |
+| `rewards/chosen` | Increasing | Flat = model not learning preferences |
+| `rewards/rejected` | Decreasing | Increasing = model prefers wrong responses |
+| `rewards/margins` | Positive and increasing | Negative = prefers rejected over chosen |
+| `rewards/accuracies` | > 0.5, toward 0.7+ | < 0.5 = worse than random |
+| `logps/rejected` | Decreasing | Increasing = reward hacking |
+| `grad_norm` | 0.01 - 10.0 | > 100 = exploding gradients |
+
+Method-specific: DPO/IPO watch `rewards/margins`; KTO loss is noisier; ORPO monitor SFT + odds ratio components; SimPO check length-normalized reward separation.
+
+## Known Issues
+
+| Issue | Fix |
+|-------|-----|
+| Sample packing crash | Set `sample_packing: false` (required for all preference methods) |
+| KTO `KeyError: 'label'` | Ensure dataset has boolean `label` column |
+| ORPO/KTO `KeyError` during tokenization | Add `remove_unused_columns: false` |
+| ORPO template not applied | ORPO requires explicit `chat_template` setting |
+| OOM with ref model (DPO/IPO/KTO) | Use LoRA/QLoRA, or switch to ORPO/SimPO (no ref model) |
+| IPO + label_smoothing | Do not set `dpo_label_smoothing` when `rl: ipo` |
+
+Full troubleshooting: [training_stability.qmd](../training_stability.qmd)
+
+## File Map
+
+```
+src/axolotl/
+  core/trainers/dpo/              # DPO trainer, args, strategy
+  core/builders/rl.py             # HFRLTrainerBuilder — routes rl type → trainer class
+  core/training_args.py           # AxolotlKTOConfig, AxolotlORPOConfig, AxolotlCPOConfig
+  prompt_strategies/
+    dpo/                          # DPO/IPO/SimPO dataset strategies
+      chat_template.py            # chat_template.default, chat_template.argilla_chat
+      chatml.py                   # chatml.default/intel/icr/argilla_chat/prompt_pairs/ultra
+      llama3.py                   # llama3 variants (same subtypes as chatml)
+      user_defined.py             # Custom field mapping
+      passthrough.py              # No transform
+    kto/                          # KTO dataset strategies (chatml, llama3, user_defined)
+    orpo/                         # ORPO dataset strategies (chat_template.argilla)
+  utils/schemas/enums.py          # RLType enum (dpo, ipo, kto, orpo, simpo, grpo, gdpo, ebft)
+  utils/schemas/config.py         # All rl/dpo/kto/orpo/simpo config fields
+
+docs/rlhf.qmd                    # Full user docs: all dataset formats, config templates
+docs/choosing_method.qmd          # SFT vs DPO vs GRPO decision guide
+examples/qwen2/dpo.yaml           # DPO example
+examples/llama-3/qlora-1b-kto.yaml  # KTO example
+```

docs/agents/pretraining.md

@@ -0,0 +1,75 @@
+# Pretraining / Continual Pretraining — Agent Reference
+
+Train on raw text with no input masking. Two approaches depending on dataset size.
+
+## When to Use
+
+- Continual pretraining on domain-specific corpora
+- Adapting a base model to a new language or domain before fine-tuning
+- Pretraining-style data where the entire text is the training signal
+
+## Choosing an Approach
+
+| | Non-streaming (`type: completion`) | Streaming (`pretraining_dataset`) |
+|---|---|---|
+| **Dataset size** | Fits in memory | Too large to fit in memory |
+| **Tokenization** | Pre-tokenized before training | On-demand during training |
+| **Config key** | `datasets:` | `pretraining_dataset:` |
+| **Long text handling** | Splits texts exceeding `sequence_len` | Concatenates into fixed-length sequences |
+| **Benefit** | Can preprocess on CPU, transfer to GPU | Start training immediately, no preprocessing |
+
+## Non-Streaming: `type: completion`
+
+For smaller datasets that fit in memory. Pre-tokenizes the entire dataset.
+
+```yaml
+datasets:
+  - path: my_corpus
+    type: completion
+    # field: text              # Column name (default: "text")
+```
+
+## Streaming: `pretraining_dataset`
+
+For large corpora. Streams data on-demand without loading everything into memory.
+
+```yaml
+pretraining_dataset:
+  - path: HuggingFaceFW/fineweb-edu
+    type: pretrain
+    text_column: text
+    split: train
+
+max_steps: 1000                          # Required — axolotl can't infer dataset size
+streaming_multipack_buffer_size: 10000   # Buffer for sample packing
+pretrain_multipack_attn: true            # Prevent cross-attention between packed samples
+```
+
+`max_steps` is required for streaming — one step = `sequence_len * micro_batch_size * gradient_accumulation_steps * num_gpus` tokens.
+
+Full streaming docs: [streaming.qmd](../streaming.qmd)
+
+## Dataset Format
+
+```json
+{"text": "The complete document text goes here."}
+```
+
+## Key Settings
+
+- `sample_packing: true` + `pad_to_sequence_len: true` — pack documents into fixed-length sequences
+- `flash_attention: true` — required for sample packing
+- No adapter — typically full fine-tune for pretraining
+- `train_on_inputs: true` — default for completion (all tokens trained on)
+
+## File Map
+
+```
+src/axolotl/
+  prompt_strategies/completion.py    # Non-streaming: completion prompt strategy (no masking)
+  utils/data/sft.py                  # Non-streaming: dataset loading and processing
+  utils/data/streaming.py            # Streaming: encode_streaming(), wrap_streaming_dataset()
+  utils/schemas/config.py            # Config fields: pretraining_dataset, pretrain_multipack_attn, etc.
+
+examples/streaming/pretrain.yaml     # Full streaming pretraining example config
+```

docs/agents/reward_modelling.md

@@ -0,0 +1,48 @@
+# Reward Modelling — Agent Reference
+
+Train models to score responses for use as reward signals in RL. For full docs, see [reward_modelling.qmd](../reward_modelling.qmd).
+
+## Types
+
+### Outcome Reward Models (ORM)
+
+Train a classifier to predict preference over entire interactions. Uses `AutoModelForSequenceClassification`.
+
+```yaml
+base_model: google/gemma-2-2b
+model_type: AutoModelForSequenceClassification
+num_labels: 1
+reward_model: true
+chat_template: gemma
+datasets:
+  - path: argilla/distilabel-intel-orca-dpo-pairs
+    type: bradley_terry.chat_template
+```
+
+Dataset format: `{"system": "...", "input": "...", "chosen": "...", "rejected": "..."}`
+
+### Process Reward Models (PRM)
+
+Train a token classifier to score each reasoning step. Uses `AutoModelForTokenClassification`.
+
+```yaml
+base_model: Qwen/Qwen2.5-3B
+model_type: AutoModelForTokenClassification
+num_labels: 2
+process_reward_model: true
+datasets:
+  - path: trl-lib/math_shepherd
+    type: stepwise_supervised
+```
+
+Dataset format: see [stepwise_supervised.qmd](../dataset-formats/stepwise_supervised.qmd).
+
+## File Map
+
+```
+src/axolotl/
+  core/builders/causal.py                    # Handles reward_model flag in trainer builder
+  prompt_strategies/bradley_terry/           # Bradley-Terry prompt strategies
+  prompt_strategies/stepwise_supervised.py   # PRM dataset strategy
+  utils/schemas/config.py                    # reward_model, process_reward_model config fields
+```

docs/agents/sft.md

@@ -0,0 +1,139 @@
+# SFT — Agent Reference
+
+Supervised fine-tuning pipeline reference. For config templates and dataset format examples, see [getting-started.qmd](../getting-started.qmd) and [dataset-formats/](../dataset-formats/).
+
+## Architecture
+
+```
+YAML Config → axolotl train config.yaml
+
+  1. Load base model (+ quantization if QLoRA/8-bit)
+  2. Apply adapter layers (LoRA/QLoRA) if configured
+  3. Load + tokenize dataset(s)
+     - Apply prompt template (chat_template / alpaca / custom)
+     - Mask inputs (train_on_inputs: false)
+     - Pack samples into sequences (sample_packing: true)
+  4. Training loop (HuggingFace Trainer)
+     - forward → loss → backward → optimizer step → lr scheduler step
+  5. Save model / adapter weights + tokenizer
+
+Multi-GPU: FSDP or DeepSpeed shards model across GPUs automatically.
+```
+
+## Components Required
+
+1. A YAML config — model, dataset(s), adapter settings, hyperparameters
+2. A dataset — HuggingFace Hub, local JSONL/JSON/Parquet, or S3/GCS path
+3. (Optional) A custom prompt strategy — for non-standard dataset formats
+
+No external server processes needed (unlike GRPO which requires vLLM).
+
+## Dataset Format Decision Tree
+
+```
+Is your data in chat/message format?
+  ├─ YES: OpenAI message format (role/content)?
+  │   ├─ YES ──────────────────────> type: chat_template  (recommended)
+  │   └─ NO (custom field names) ──> type: chat_template + message_property_mappings
+  └─ NO: Instruction/response pairs?
+      ├─ YES ──> type: alpaca       (instruction, input, output)
+      └─ NO: Raw text?
+          ├─ YES with segments ─────> type: input_output  (template-free masking)
+          └─ YES continuous ────────> type: completion     (pretraining-style)
+```
+
+Full format specs: [dataset-formats/](../dataset-formats/)
+
+## Model Size to Adapter Choice
+
+| Model Size | LoRA | QLoRA (4-bit) | Full Fine-Tune | VRAM (approx) |
+|-----------|------|---------------|----------------|---------------|
+| 1-3B | Preferred | Low-budget option | Single GPU OK | 8-16 GB (LoRA) |
+| 7-8B | Preferred | Good balance | Needs multi-GPU | 16-24 GB (LoRA) |
+| 13-14B | Preferred | Good balance | Multi-GPU required | 24-40 GB (LoRA) |
+| 30-70B | LoRA or QLoRA | Preferred for single GPU | Multi-node | 40-80 GB (QLoRA) |
+
+## Hyperparameter Ranges
+
+| Parameter | LoRA | QLoRA | Full FT |
+|-----------|------|-------|---------|
+| `learning_rate` | 1e-4 to 3e-4 | 1e-4 to 3e-4 | 1e-5 to 5e-5 |
+| `lora_r` | 16-64 | 16-64 | N/A |
+| `lora_alpha` | 1-2x `lora_r` | 1-2x `lora_r` | N/A |
+| `micro_batch_size` | 2-8 | 2-4 | 1-2 |
+| `gradient_accumulation_steps` | 2-8 | 4-16 | 4-16 |
+| `num_epochs` | 1-3 | 1-3 | 1-3 |
+| `optimizer` | `adamw_8bit` | `adamw_bnb_8bit` | `adamw_torch_fused` |
+
+Effective batch = micro_batch * grad_accum * num_gpus. Lower LR for larger models.
+
+## Healthy Training Indicators
+
+| Metric | Healthy | Problem |
+|--------|---------|---------|
+| `train_loss` | Decreasing, starting ~2-4 for chat models | Flat or increasing from step 1 — data or LR issue |
+| `eval_loss` | Decreasing, tracks train_loss | Increasing while train_loss decreases — overfitting |
+| `grad_norm` | 0.1-10, relatively stable | Spikes >100 — instability. 0.0 — frozen weights |
+| `learning_rate` | Follows scheduler curve | Flat or NaN — config issue |
+
+Watch for: loss never decreasing (check `train_on_inputs`, dataset, LR), loss goes to 0 quickly (overfitting), eval_loss diverging (reduce epochs, add regularization). See [training_stability.qmd](../training_stability.qmd).
+
+## Known Issues
+
+| Issue | Fix |
+|-------|-----|
+| OOM during training | Reduce `micro_batch_size`, enable `gradient_checkpointing`, reduce `sequence_len` |
+| `sample_packing` + SDPA + bf16 = 0.0 loss | Use `attn_implementation: flash_attention_2` or disable `sample_packing` |
+| Missing chat template error | Set `chat_template: chatml` explicitly |
+| Label masking wrong | Run `axolotl preprocess config.yaml --debug` and inspect labels |
+| Loss NaN | Use `bf16: auto`, lower LR, check data for empty samples |
+| Tokenizer pad token / infinite loss | Set `special_tokens: pad_token: "<\|end_of_text\|>"` |
+| FSDP save hangs | Use `fsdp_state_dict_type: FULL_STATE_DICT` |
+| DeepSpeed CheckpointError | Set `use_reentrant: true` in `gradient_checkpointing_kwargs` |
+
+## Profiling
+
+To profile training and identify optimization opportunities:
+
+```yaml
+# Profile steps 3-7 (after warmup/autotuning settles)
+profiler_steps_start: 3
+profiler_steps: 5
+```
+
+This produces `profiler_trace.json` (Chrome trace) and `snapshot.pickle` (memory snapshot) in `output_dir`.
+View the Chrome trace at `chrome://tracing`.
+
+To programmatically inspect the trace:
+```bash
+python scripts/analyze_profile.py output_dir/
+```
+
+The trace shows per-kernel CUDA times, memory allocations, and operator-level breakdown. Look for:
+- **Large matmul kernels**: candidates for fusion or quantization
+- **Memory copies (H2D/D2H)**: unnecessary data movement
+- **Small frequent kernels**: candidates for kernel fusion
+- **Gaps between kernels**: pipeline bubbles from CPU overhead
+
+Full troubleshooting: [training_stability.qmd](../training_stability.qmd), [debugging.qmd](../debugging.qmd)
+
+## File Map
+
+```
+src/axolotl/
+  cli/train.py                     # Entry point for `axolotl train`
+  cli/preprocess.py                # Entry point for `axolotl preprocess`
+  core/builders/causal.py          # HFCausalTrainerBuilder — wires config → SFT trainer
+  core/trainers/base.py            # AxolotlTrainer — base trainer class
+  core/trainers/mixins/            # Packing, optimizer, scheduler, checkpoints
+  prompt_strategies/               # Format handlers: chat_template, alpaca, completion, input_output
+  utils/schemas/config.py          # AxolotlInputConfig — main config schema
+  utils/schemas/datasets.py        # SFTDataset, DatasetConfig
+  utils/schemas/peft.py            # LoraConfig — LoRA parameters
+  integrations/liger/              # Liger kernel plugin
+
+examples/llama-3/                  # LoRA, QLoRA, full FT example configs
+docs/getting-started.qmd           # Quickstart with config templates
+docs/optimizations.qmd             # Flash attention, gradient checkpointing, sample packing
+docs/multi-gpu.qmd                 # FSDP and DeepSpeed setup
+```

docs/amd_hpc.qmd

@@ -86,7 +86,7 @@ export HF_DATASETS_OFFLINE=1
 Download a base model using the Hugging Face CLI:
 
 ```bash
-huggingface-cli download meta-llama/Meta-Llama-3.1-8B --local-dir ~/hfdata/llama3.1-8B
+hf download meta-llama/Meta-Llama-3.1-8B --local-dir ~/hfdata/llama3.1-8B
 ```
 
 ### 10. Create Axolotl Configuration

docs/attention.qmd

@@ -0,0 +1,242 @@
+---
+title: Attention
+description: Supported attention modules in Axolotl
+---
+
+Axolotl routes attention via a single config field:
+
+```yaml
+attn_implementation: <backend>
+```
+
+`attn_implementation` is passed through to `transformers` verbatim (via
+`model.config._attn_implementation`). Accepted values are the HF-native
+backends, axolotl-registered backends, or a hub-kernel path.
+
+## Backends
+
+| `attn_implementation` | Description |
+|---|---|
+| `eager` | Plain PyTorch attention. No packing support. |
+| `sdpa` | PyTorch `scaled_dot_product_attention`. No packing support. |
+| `flash_attention_2` | Dao-AILab Flash Attention 2. |
+| `flash_attention_3` | Dao-AILab Flash Attention 3 (Hopper+). |
+| `flex_attention` | Torch Flex Attention (requires torch ≥ 2.6). |
+| `xformers` | xFormers memory-efficient attention. |
+| `sage` | SageAttention (QK int8 / PV fp16). |
+| `s2` | Shifted-Sparse Attention (LLaMA only, FA2 under the hood). |
+| `fp8` | torchao FP8 low-precision attention (requires SM90+, torch ≥ 2.11). Loaded as SDPA and patched post-load. |
+| `kernels-community/flash-attn3` | HF hub FA3 kernel. |
+| `kernels-community/sage-attention` | HF hub SageAttention kernel. |
+| Other `<org>/<name>` path | Any hub-kernel path supported by `transformers`. |
+
+Short-form aliases (`flash`, `fa2`, `flex`, `sdp`, etc.) are **not accepted** —
+set the canonical name above.
+
+### Capability flags
+
+Axolotl derives three boolean capability flags from `attn_implementation` and
+exposes them on the validated config:
+
+- `cfg.attn_supports_packing` — backend supports varlen sample packing via
+  `position_ids`. Gates multipack patches and `sample_packing_drop_attention_mask`.
+- `cfg.attn_uses_flash_lib` — backend needs the `flash_attn` (Dao-AILab)
+  monkeypatches (FA4 auto, LLaMA flash hijack, ring-FA).
+- `cfg.attn_needs_dtype_cast` — backend requires fp16/bf16 embeddings
+  (everything except `eager` and `sdpa`).
+
+These are **computed** — they cannot be overridden from YAML.
+
+## Per-backend notes
+
+### SDPA
+
+Default PyTorch attention. See
+[PyTorch docs](https://docs.pytorch.org/docs/stable/generated/torch.nn.functional.scaled_dot_product_attention.html).
+
+```yaml
+attn_implementation: sdpa
+```
+
+### Flash Attention
+
+Axolotl supports FA2, FA3, and FA4. The best available version is used
+automatically based on your installed packages and GPU.
+
+```yaml
+attn_implementation: flash_attention_2  # or flash_attention_3
+```
+
+#### Flash Attention 2
+
+Requirements: Ampere, Ada, or Hopper GPUs (Turing or lower not supported)
+
+```bash
+pip install flash-attn --no-build-isolation
+```
+
+::: {.callout-tip}
+
+If you get `undefined symbol` while training, ensure you installed PyTorch prior to Axolotl.
+Alternatively, try reinstall or downgrade a version.
+
+:::
+
+#### Flash Attention 3
+
+Requirements: Hopper only and CUDA 12.8 (recommended)
+
+```bash
+git clone https://github.com/Dao-AILab/flash-attention.git
+cd flash-attention/hopper
+python setup.py install
+```
+
+#### Flash Attention 4
+
+Requirements: Hopper or Blackwell GPUs. Auto-applied when `attn_uses_flash_lib`
+is true and FA4 is importable.
+
+FA4 is still a pre-release on PyPI, so `--pre` is required:
+
+```bash
+pip install --pre flash-attn-4
+```
+
+Or from source:
+
+```bash
+git clone https://github.com/Dao-AILab/flash-attention.git
+cd flash-attention/flash_attn/cute
+pip install -e .
+
+# FA2's flash_attn package includes a cute/ stub that shadows FA4.
+# Remove it so Python can find the real FA4 module:
+rm -r $(python -c "import flash_attn; print(flash_attn.__path__[0])")/cute
+```
+
+::: {.callout-note}
+
+**Hopper (SM90) users**: The backward kernel is not yet included in the pip package. To use FA4
+for training on Hopper, install from source using the instructions above.
+
+:::
+
+::: {.callout-warning}
+
+FA4 only supports head dimensions up to 128 (`d ≤ 128`). The DeepSeek shape `(192, 128)` is
+also supported but only on Blackwell. Axolotl automatically detects incompatible head dimensions
+and falls back to FA2/3.
+
+:::
+
+### AMD
+
+Requirements: ROCm 6.0 and above. See
+[Flash Attention AMD docs](https://github.com/Dao-AILab/flash-attention/tree/main?tab=readme-ov-file#amd-rocm-support).
+
+### Flex Attention
+
+```yaml
+attn_implementation: flex_attention
+torch_compile: true  # recommended
+```
+
+Requires torch ≥ 2.6. See [PyTorch docs](https://pytorch.org/blog/flexattention/).
+
+### SageAttention
+
+Requirements: Ampere, Ada, or Hopper GPUs.
+
+```yaml
+attn_implementation: sage
+```
+
+```bash
+pip install sageattention==2.2.0 --no-build-isolation
+```
+
+::: {.callout-warning}
+
+Only LoRA/QLoRA recommended. Full finetuning has been observed to drop loss to 0. See
+[GitHub Issue](https://github.com/thu-ml/SageAttention/issues/198).
+
+:::
+
+For more details: [Sage Attention](https://github.com/thu-ml/SageAttention).
+
+### xFormers
+
+```yaml
+attn_implementation: xformers
+```
+
+::: {.callout-tip}
+
+Recommended for Turing GPUs or below (e.g. Colab T4).
+
+:::
+
+### Shifted Sparse Attention
+
+::: {.callout-warning}
+
+Planned for deprecation. Prefer one of the backends above.
+
+:::
+
+Requirements: LLaMA model architecture. Loaded as FA2 under the hood and
+patched to implement shifted-sparse attention. Does not support sample packing.
+
+```yaml
+attn_implementation: s2
+```
+
+### FP8
+
+torchao low-precision attention. Loaded as SDPA and patched post-load.
+
+Requirements: SM90+ (Hopper/Blackwell), PyTorch ≥ 2.11, torchao ≥ 0.17,
+flash-attn with FA3. KV caching must be disabled.
+
+```yaml
+attn_implementation: fp8
+```
+
+### Hub kernels
+
+```yaml
+attn_implementation: kernels-community/flash-attn3
+```
+
+Passed through to `transformers`; axolotl does not install the kernel itself.
+For recognized hub paths the capability flags are set automatically; for
+arbitrary paths axolotl uses conservative defaults (`attn_supports_packing=False`,
+`attn_uses_flash_lib=False`).
+
+## Migrating from legacy boolean flags
+
+The following legacy config fields are **deprecated** and will be removed in a
+future release. Each emits a `DeprecationWarning` when set and is stripped from
+the validated config.
+
+| Legacy | Canonical |
+|---|---|
+| `flash_attention: true` | `attn_implementation: flash_attention_2` |
+| `sdp_attention: true` | `attn_implementation: sdpa` |
+| `xformers_attention: true` | `attn_implementation: xformers` |
+| `flex_attention: true` | `attn_implementation: flex_attention` |
+| `sage_attention: true` | `attn_implementation: sage` |
+| `s2_attention: true` | `attn_implementation: s2` |
+| `eager_attention: true` | `attn_implementation: eager` |
+
+Combining `attn_implementation` with a legacy flag (e.g. `attn_implementation:
+flash_attention_2` **and** `flash_attention: true`) raises — pick one.
+
+::: {.callout-note}
+
+Existing example configs under `examples/` still use the legacy flags. They
+continue to work with a deprecation warning; they will be migrated in a
+follow-up pass.
+
+:::

docs/checkpoint_saving.qmd

@@ -0,0 +1,86 @@
+---
+title: "Checkpoint Saving"
+format:
+  html:
+    toc: true
+    toc-depth: 2
+    number-sections: true
+execute:
+  enabled: false
+---
+
+## Overview
+
+Axolotl supports on-demand checkpoint saving during training. You can trigger checkpoints via file-based triggers (for programmatic control) or Control+C (for interactive use).
+
+## File-Based Checkpoint Trigger
+
+### Configuration
+
+Enable in your config:
+
+```yaml
+dynamic_checkpoint:
+  enabled: true
+  check_interval: 100  # Optional: check every N steps (default: 100)
+  trigger_file_path: "axolotl_checkpoint.save"  # Optional: custom filename
+```
+
+**Options:**
+- `enabled`: `true` to enable (required)
+- `check_interval`: Steps between file checks. Default: 100. Lower = faster response, higher I/O overhead.
+- `trigger_file_path`: Custom trigger filename. Default: `axolotl_checkpoint.save`
+
+### How It Works
+
+1. Rank 0 checks for trigger file every `check_interval` steps in `output_dir`
+2. When detected, file is deleted and checkpoint is saved
+3. In distributed training, rank 0 broadcasts to synchronize all ranks
+
+### Usage
+
+**Command line:**
+```bash
+touch /path/to/output_dir/axolotl_checkpoint.save
+```
+
+**Programmatic:**
+```python
+from pathlib import Path
+Path("/path/to/output_dir/axolotl_checkpoint.save").touch()
+```
+
+Checkpoint saves within the next `check_interval` steps. The trigger file is auto-deleted after detection, so you can create it multiple times.
+
+**Custom filename:**
+```yaml
+dynamic_checkpoint:
+  enabled: true
+  trigger_file_path: "my_trigger.save"
+```
+```bash
+touch /path/to/output_dir/my_trigger.save
+```
+
+## Control+C (SIGINT) Checkpoint
+
+Pressing `Ctrl+C` during training saves the model state and exits gracefully. **Note:** This saves only the model weights, not optimizer state. For resumable checkpoints, use the file-based trigger.
+
+## Best Practices
+
+- **Check interval**: Lower values (10-50) for fast training, default 100 for slower training
+- **Distributed training**: Create trigger file once; rank 0 handles synchronization
+- **Resume**: Dynamic checkpoints can be resumed like regular checkpoints via `resume_from_checkpoint`
+
+## Example
+
+```yaml
+output_dir: ./outputs/lora-out
+save_steps: 500  # Scheduled checkpoints
+
+dynamic_checkpoint:
+  enabled: true
+  check_interval: 50
+```
+
+This enables scheduled checkpoints every 500 steps plus on-demand saves via file trigger (checked every 50 steps).

docs/choosing_method.qmd

@@ -0,0 +1,206 @@
+---
+title: "Which Fine-Tuning Method Should I Use?"
+description: "A decision guide for choosing the right fine-tuning method, adapter, and hardware configuration in Axolotl."
+format:
+  html:
+    toc: true
+    toc-depth: 3
+    number-sections: true
+execute:
+  enabled: false
+---
+
+## Overview {#sec-overview}
+
+Axolotl supports four broad categories of fine-tuning, each suited to different data types, objectives, and resource constraints.
+
+| Method | What It Does | Data You Need |
+|--------|-------------|---------------|
+| **Supervised Fine-Tuning (SFT)** | Teaches the model to produce specific outputs given inputs | Input-output pairs (instructions, conversations, completions) |
+| **Preference Learning (DPO/KTO/ORPO)** | Steers the model toward preferred outputs and away from dispreferred ones | Chosen/rejected response pairs (DPO, ORPO) or binary labels (KTO) |
+| **Reinforcement Learning (GRPO)** | Optimizes the model against a reward signal through online generation | A reward function (code or model-based) and a prompt dataset |
+| **Reward Modeling** | Trains a model to score responses, for use as a reward signal in RL | Preference pairs ranked by quality |
+
+Each method is configured through a YAML file with `rl: <method>` (or omitted for SFT). All methods support LoRA, QLoRA, and full fine-tuning unless otherwise noted.
+
+## Decision Tree {#sec-decision-tree}
+
+Use the following flowchart to choose your method. Start at the top and follow the path that matches your situation.
+
+```
+Do you have a reward function (code-based or model-based)?
+├── YES
+│   └── Use GRPO (rl: grpo)
+│       The model generates its own completions and learns from reward scores.
+│       Best for: math, code, reasoning, tasks with verifiable answers.
+│       See: rlhf.qmd#grpo
+│
+└── NO
+    │
+    Do you have preference pairs (chosen vs. rejected responses)?
+    ├── YES
+    │   │
+    │   Are they paired (same prompt, one chosen, one rejected)?
+    │   ├── YES → Use DPO (rl: dpo)
+    │   │         Direct optimization without a separate reward model.
+    │   │         See: rlhf.qmd#dpo
+    │   │
+    │   └── NO (only binary good/bad labels)
+    │       └── Use KTO (rl: kto)
+    │           Works with unpaired preference data.
+    │           See: rlhf.qmd#kto
+    │
+    └── NO
+        │
+        Do you have input-output examples?
+        ├── YES → Use SFT
+        │         The simplest and most common method.
+        │         See: getting-started.qmd
+        │
+        └── NO
+            └── You need to create training data first.
+                Consider generating preference pairs with an LLM judge,
+                or writing a reward function for GRPO.
+```
+
+::: {.callout-tip}
+**When in doubt, start with SFT.** It is the most straightforward method and works well for most tasks. You can always move to preference learning or RL later to further refine behavior.
+:::
+
+### Method Comparison at a Glance
+
+| Criterion | SFT | DPO | KTO | GRPO |
+|-----------|-----|-----|-----|------|
+| Data complexity | Low (input-output pairs) | Medium (preference pairs) | Medium (binary labels) | Low (prompts + reward code) |
+| Compute cost | Low | Medium | Medium | High (requires vLLM server) |
+| Learning signal | Supervised | Contrastive | Contrastive | Online reward |
+| Online generation | No | No | No | Yes |
+| Reward model needed | No | No | No | No (uses reward functions) |
+| Best for | Task adaptation, instruction following | Safety, style alignment | Unpaired preference data | Reasoning, math, code |
+
+::: {.callout-note}
+**ORPO** is an alternative to DPO that combines SFT and preference optimization in a single training stage, removing the need for a separate SFT step. Configure with `rl: orpo`. See [rlhf.qmd](rlhf.qmd) for details.
+:::
+
+## Adapter Selection {#sec-adapter-selection}
+
+Once you have chosen a method, decide how to apply the parameter updates. The three main options trade off VRAM usage against model quality.
+
+### QLoRA
+
+- **How it works**: The base model is loaded in 4-bit (NF4) quantization. Small low-rank adapter matrices are trained in higher precision on top.
+- **VRAM savings**: Roughly 4x reduction in model memory compared to full fine-tuning.
+- **Quality**: Slight degradation due to quantization noise, but often negligible for task-specific fine-tuning.
+- **When to use**: When your GPU cannot fit the model in full precision, or when you want fast experimentation.
+
+```yaml
+adapter: qlora
+load_in_4bit: true
+lora_r: 32
+lora_alpha: 64
+lora_target_linear: true
+```
+
+### LoRA
+
+- **How it works**: The base model is loaded at full precision (or 8-bit). Low-rank adapter matrices are trained alongside.
+- **VRAM savings**: Roughly 2-3x reduction compared to full fine-tuning (model weights are frozen, only adapters + optimizer states for adapters are stored).
+- **Quality**: Very close to full fine-tuning for most tasks, especially with higher rank values.
+- **When to use**: When you have enough VRAM for the base model but not for full optimizer states.
+
+```yaml
+adapter: lora
+lora_r: 32
+lora_alpha: 64
+lora_target_linear: true
+```
+
+::: {.callout-tip}
+For GRPO training, LoRA is strongly recommended. The vLLM server needs to sync weights from the trainer, and LoRA sync (`trl.vllm_lora_sync: true`) is far more efficient than syncing full merged weights. See [vLLM Serving](vllm_serving.qmd) for details.
+:::
+
+### Full Fine-Tuning
+
+- **How it works**: All model parameters are updated during training. No adapters.
+- **VRAM savings**: None. Requires memory for model weights, gradients, and optimizer states (roughly 4x model size in bf16 with AdamW).
+- **Quality**: Highest potential quality, especially for large distribution shifts.
+- **When to use**: When you have ample GPU memory or multi-GPU setups, and need maximum performance. Also required for pre-training.
+
+```yaml
+# No adapter or load_in_* lines needed
+micro_batch_size: 1
+gradient_accumulation_steps: 16
+```
+
+### Quick Comparison
+
+| | QLoRA | LoRA | Full |
+|---|---|---|---|
+| Trainable params | ~0.1-1% | ~0.1-1% | 100% |
+| Model memory | ~25% of full | ~50-100% of full | 100% |
+| Optimizer memory | Tiny (adapters only) | Tiny (adapters only) | 2x model size (AdamW) |
+| Training speed | Slower (dequantization overhead) | Baseline | Faster per-step (no adapter overhead) |
+| Inference | Merge or serve with adapter | Merge or serve with adapter | Direct |
+| Multi-GPU required? | Rarely | For 13B+ models | For 7B+ models |
+
+## Hardware Mapping {#sec-hardware-mapping}
+
+The tables below provide approximate GPU memory requirements. Actual usage depends on context length, batch size, and optimizer choice.
+
+### SFT / Preference Learning
+
+| Model Size | QLoRA (4-bit) | LoRA (bf16) | Full (bf16 + AdamW) |
+|------------|--------------|-------------|---------------------|
+| 1-3B | 6-8 GB | 8-12 GB | 24-32 GB |
+| 7-8B | 10-14 GB | 16-24 GB | 60-80 GB |
+| 13-14B | 16-20 GB | 28-40 GB | 120+ GB |
+| 30-34B | 24-32 GB | 64-80 GB | 2-4x 80 GB |
+| 70-72B | 40-48 GB | 2x 80 GB | 4-8x 80 GB |
+
+::: {.callout-important}
+These estimates assume a short context length (512-2048 tokens) and micro_batch_size of 1-2. Longer sequences and larger batches increase memory significantly due to activations. Use [gradient checkpointing](gradient_checkpointing.qmd) to reduce activation memory at the cost of ~30% slower training.
+:::
+
+### GRPO (RL Training)
+
+GRPO requires additional GPU(s) for the vLLM generation server. Plan for at least two GPUs: one for training, one for vLLM.
+
+| Model Size | Training GPU (LoRA, bf16) | vLLM GPU | Total GPUs |
+|------------|--------------------------|----------|------------|
+| 0.5-3B | 1x 24 GB | 1x 24 GB | 2x 24 GB |
+| 7-8B | 1x 80 GB | 1x 80 GB | 2x 80 GB |
+| 13-14B | 1-2x 80 GB | 1-2x 80 GB | 2-4x 80 GB |
+| 30-72B | 2-4x 80 GB (FSDP/DeepSpeed) | 2-4x 80 GB (tensor parallel) | 4-8x 80 GB |
+
+::: {.callout-tip}
+For single-GPU GRPO, use `vllm_mode: colocate` with `vllm_enable_sleep_mode: true`. The vLLM engine shares the GPU and offloads VRAM when not generating. This works for smaller models (up to ~3B on a 24 GB GPU) but is slower than the two-GPU server mode.
+:::
+
+### Multi-GPU Threshold
+
+You need multi-GPU training when:
+
+- **Full fine-tuning** of models 7B+ (use FSDP or DeepSpeed ZeRO)
+- **LoRA** of models 30B+ (or 13B+ with long contexts)
+- **GRPO** almost always (separate vLLM server), unless using colocate mode
+
+See [Multi-GPU Training](multi-gpu.qmd) for FSDP and DeepSpeed configuration.
+
+## Quick Links {#sec-quick-links}
+
+| Method | Config Key | Documentation | Example Config |
+|--------|-----------|---------------|----------------|
+| SFT | *(default, no `rl:` key)* | [Getting Started](getting-started.qmd) | `examples/llama-3/lora-1b.yml` |
+| DPO | `rl: dpo` | [RLHF - DPO](rlhf.qmd#dpo) | See rlhf.qmd |
+| KTO | `rl: kto` | [RLHF - KTO](rlhf.qmd#kto) | See rlhf.qmd |
+| ORPO | `rl: orpo` | [RLHF - ORPO](rlhf.qmd#orpo) | See rlhf.qmd |
+| GRPO | `rl: grpo` | [RLHF - GRPO](rlhf.qmd#grpo), [vLLM Serving](vllm_serving.qmd) | See rlhf.qmd |
+| Reward Modeling | `rl: reward_trainer` | [Reward Modelling](reward_modelling.qmd) | See reward_modelling.qmd |
+
+### Related Guides
+
+- [Configuration Reference](config-reference.qmd) -- Full list of all config options
+- [Dataset Formats](dataset-formats) -- How to structure your training data
+- [Optimizations](optimizations.qmd) -- Flash attention, gradient checkpointing, mixed precision
+- [Multi-GPU Training](multi-gpu.qmd) -- FSDP and DeepSpeed setup
+- [vLLM Serving](vllm_serving.qmd) -- Setting up vLLM for GRPO training

docs/cli.qmd

@@ -1,5 +1,5 @@
 ---
-title: "CLI Reference"
+title: "Command Line Interface (CLI)"
 format:
   html:
     toc: true
@@ -23,6 +23,20 @@ axolotl <command> [config.yml] [options]
 
 The config file can be local or a URL to a raw YAML file.
 
+### Launcher Arguments
+
+For commands that support multi-GPU (`train`, `evaluate`, ...), you can pass launcher-specific arguments using the `--` separator:
+
+```bash
+# Pass torchrun arguments
+axolotl train config.yml --launcher torchrun -- --nproc_per_node=2 --nnodes=1
+
+# Pass accelerate arguments
+axolotl train config.yml --launcher accelerate -- --config_file=accelerate_config.yml --num_processes=4
+```
+
+Arguments after `--` are passed directly to the launcher (torchrun, accelerate launch, etc.).
+
 ## Command Reference
 
 ### fetch
@@ -80,7 +94,11 @@ axolotl train config.yml \
     --num-epochs 3
 
 # Training without accelerate
-axolotl train config.yml --no-accelerate
+axolotl train config.yml --launcher python
+
+# Pass launcher-specific arguments using -- separator
+axolotl train config.yml --launcher torchrun -- --nproc_per_node=2 --nnodes=1
+axolotl train config.yml --launcher accelerate -- --config_file=accelerate_config.yml
 
 # Resume training from checkpoint
 axolotl train config.yml --resume-from-checkpoint path/to/checkpoint
@@ -170,11 +188,14 @@ axolotl merge-sharded-fsdp-weights config.yml
 
 ### evaluate
 
-Evaluates a model's performance using metrics specified in the config.
+Evaluates a model's performance (loss etc) on the train and eval datasets.
 
 ```bash
 # Basic evaluation
 axolotl evaluate config.yml
+
+# Evaluation with launcher arguments
+axolotl evaluate config.yml --launcher torchrun -- --nproc_per_node=2
 ```
 
 ### lm-eval
@@ -189,6 +210,8 @@ axolotl lm-eval config.yml
 Configuration options:
 
 ```yaml
+lm_eval_model: # model to evaluate (local or hf path)
+
 # List of tasks to evaluate
 lm_eval_tasks:
   - arc_challenge
@@ -197,6 +220,29 @@ lm_eval_batch_size: # Batch size for evaluation
 output_dir: # Directory to save evaluation results
 ```
 
+See [LM Eval Harness integration docs](https://docs.axolotl.ai/docs/custom_integrations.html#language-model-evaluation-harness-lm-eval) for full configuration details.
+
+### delinearize-llama4
+
+Delinearizes a Llama 4 linearized model into a regular HuggingFace Llama 4 model. This only works with the non-quantized linearized model.
+
+```bash
+axolotl delinearize-llama4 --model path/to/model_dir --output path/to/output_dir
+```
+
+This would be necessary to use with other frameworks. If you have an adapter, merge it with the non-quantized linearized model before delinearizing.
+
+### quantize
+
+Quantizes a model using the quantization configuration specified in your YAML file.
+
+```bash
+axolotl quantize config.yml
+```
+
+See [Quantization](./quantize.qmd) for more details.
+
+
 ## Legacy CLI Usage
 
 While the new Click-based CLI is preferred, Axolotl still supports the legacy module-based CLI:
@@ -235,7 +281,7 @@ Create a cloud config YAML with your Modal settings:
 ```yaml
 # cloud_config.yml
 provider: modal
-gpu: a100  # Supported: l40s, a100-40gb, a100-80gb, a10g, h100, t4, l4
+gpu: a100       # Supported: l40s, a100-40gb, a100-80gb, a10g, h100, t4, l4
 gpu_count: 1    # Number of GPUs to use
 timeout: 86400  # Maximum runtime in seconds (24 hours)
 branch: main    # Git branch to use (optional)
@@ -248,7 +294,7 @@ volumes:        # Persistent storage volumes
   - name: axolotl-artifacts
     mount: /workspace/artifacts
 
-env:            # Environment variables
+secrets:        # Secrets to inject
   - WANDB_API_KEY
   - HF_TOKEN
 ```
@@ -264,9 +310,6 @@ axolotl preprocess config.yml --cloud cloud_config.yml
 # Train on cloud
 axolotl train config.yml --cloud cloud_config.yml
 
-# Train without accelerate on cloud
-axolotl train config.yml --cloud cloud_config.yml --no-accelerate
-
 # Run lm-eval on cloud
 axolotl lm-eval config.yml --cloud cloud_config.yml
 ```
@@ -274,15 +317,27 @@ axolotl lm-eval config.yml --cloud cloud_config.yml
 ### Cloud Configuration Options
 
 ```yaml
-provider: # compute provider, currently only `modal` is supported
-gpu: # GPU type to use
-gpu_count: # Number of GPUs (default: 1)
-memory: # RAM in GB (default: 128)
-timeout: # Maximum runtime in seconds
+provider:    # compute provider, currently only `modal` is supported
+gpu:         # GPU type to use
+gpu_count:   # Number of GPUs (default: 1)
+memory:      # RAM in GB (default: 128)
+timeout:     # Maximum runtime in seconds
 timeout_preprocess: # Preprocessing timeout
-branch: # Git branch to use
-docker_tag: # Custom Docker image tag
-volumes: # List of persistent storage volumes
-env: # Environment variables to pass
-secrets: # Secrets to inject
+branch:      # Git branch to use
+docker_tag:  # Custom Docker image tag
+volumes:     # List of persistent storage volumes
+
+# Environment variables to pass. Can be specified in two ways:
+# 1. As a string: Will load the value from the host computer's environment variables
+# 2. As a key-value pair: Will use the specified value directly
+# Example:
+# env:
+#   - CUSTOM_VAR  # Loads from host's $CUSTOM_VAR
+#   - {CUSTOM_VAR: "value"}  # Uses "value" directly
+env:
+
+# Secrets to inject. Same input format as `env` but for sensitive data.
+secrets:
+  # - HF_TOKEN
+  # - WANDB_API_KEY
 ```

docs/config.qmd

@@ -1,590 +0,0 @@
----
-title: Config options
-description: A complete list of all configuration options.
----
-
-```yaml
-# This is the huggingface model that contains *.pt, *.safetensors, or *.bin files
-# This can also be a relative path to a model on disk
-base_model: ./llama-7b-hf
-# You can specify an ignore pattern if the model repo contains more than 1 model type (*.pt, etc)
-base_model_ignore_patterns:
-# If the base_model repo on hf hub doesn't include configuration .json files,
-# You can set that here, or leave this empty to default to base_model
-base_model_config: ./llama-7b-hf
-# You can specify to choose a specific model revision from huggingface hub
-revision_of_model:
-# Optional tokenizer configuration path in case you want to use a different tokenizer
-# than the one defined in the base model
-tokenizer_config:
-# If you want to specify the type of model to load, AutoModelForCausalLM is a good choice too
-model_type: AutoModelForCausalLM
-# Corresponding tokenizer for the model AutoTokenizer is a good choice
-tokenizer_type: AutoTokenizer
-# Trust remote code for untrusted source
-trust_remote_code:
-# use_fast option for tokenizer loading from_pretrained, default to True
-tokenizer_use_fast:
-# Whether to use the legacy tokenizer setting, defaults to True
-tokenizer_legacy:
-# Resize the model embeddings when new tokens are added to multiples of 32
-# This is reported to improve training speed on some models
-resize_token_embeddings_to_32x:
-
-# (Internal use only)
-# Used to identify which the model is based on
-is_falcon_derived_model:
-is_llama_derived_model:
-is_qwen_derived_model:
-# Please note that if you set this to true, `padding_side` will be set to "left" by default
-is_mistral_derived_model:
-
-# optional overrides to the base model configuration
-overrides_of_model_config:
-  # RoPE Scaling https://github.com/huggingface/transformers/pull/24653
-  rope_scaling:
-    type: # linear | dynamic
-    factor: # float
-
-# optional overrides the base model loading from_pretrained
-overrides_of_model_kwargs:
-  # use_cache: False
-
-# optional overrides to the bnb 4bit quantization configuration
-# https://huggingface.co/docs/transformers/main/main_classes/quantization#transformers.BitsAndBytesConfig
-bnb_config_kwargs:
-  # These are default values
-  llm_int8_has_fp16_weight: false
-  bnb_4bit_quant_type: nf4
-  bnb_4bit_use_double_quant: true
-
-
-# Whether you are training a 4-bit GPTQ quantized model
-gptq: true
-
-# This will attempt to quantize the model down to 8 bits and use adam 8 bit optimizer
-load_in_8bit: true
-# Use bitsandbytes 4 bit
-load_in_4bit:
-
-# Use CUDA bf16
-bf16: true # bool or 'full' for `bf16_full_eval`. require >=ampere
-# Use CUDA fp16
-fp16: true
-# Use CUDA tf32
-tf32: true # require >=ampere
-
-# No AMP (automatic mixed precision)
-bfloat16: true # require >=ampere
-float16: true
-
-# Limit the memory for all available GPUs to this amount (if an integer, expressed in gigabytes); default: unset
-gpu_memory_limit: 20GiB
-# Do the LoRA/PEFT loading on CPU -- this is required if the base model is so large it takes up most or all of the available GPU VRAM, e.g. during a model and LoRA merge
-lora_on_cpu: true
-
-# A list of one or more datasets to finetune the model with
-datasets:
-  # HuggingFace dataset repo | s3://,gs:// path | "json" for local dataset, make sure to fill data_files
-  - path: vicgalle/alpaca-gpt4
-    # The type of prompt to use for training. [alpaca, gpteacher, oasst, reflection]
-    type: alpaca # format | format:<prompt_style> (chat/instruct) | <prompt_strategies>.load_<load_fn>
-    ds_type: # Optional[str] (json|arrow|parquet|text|csv) defines the datatype when path is a file
-    data_files: # Optional[str] path to source data files
-
-    shards: # Optional[int] split dataset into N pieces (use with shards_idx)
-    shards_idx: # Optional[int] = 0 the index of sharded dataset to use
-
-    preprocess_shards: # Optional[int] process dataset in N sequential chunks for memory efficiency (exclusive with `shards`)
-
-    name: # Optional[str] name of dataset configuration to load
-    train_on_split: train # Optional[str] name of dataset split to load from
-    revision: # Optional[str] The specific revision of the dataset to use when loading from the Hugging Face Hub. This can be a commit hash, tag, or branch name. If not specified, the latest version will be used. This parameter is ignored for local datasets.
-    trust_remote_code: # Optional[bool] Trust remote code for untrusted source
-
-  # Custom user instruction prompt
-  - path: repo
-    type:
-      # The below are defaults. only set what's needed if you use a different column name.
-      system_prompt: ""
-      system_format: "{system}"
-      field_system: system
-      field_instruction: instruction
-      field_input: input
-      field_output: output
-
-      # Customizable to be single line or multi-line
-      # Use {instruction}/{input} as key to be replaced
-      # 'format' can include {input}
-      format: |-
-        User: {instruction} {input}
-        Assistant:
-      # 'no_input_format' cannot include {input}
-      no_input_format: "{instruction} "
-
-      # For `completion` datsets only, uses the provided field instead of `text` column
-      field:
-
-  # Using chat template
-  - path: ...
-    # Set type to `chat_template` to use this strategy
-    type: chat_template
-    # Specify the name of the chat template to use
-    # The name of the chat template to use for training, following values are supported:
-    # - tokenizer_default: Uses the chat template that is available in the tokenizer_config.json. If the chat template is not available in the tokenizer, it will raise an error. This is the default.
-    # - alpaca/inst/chatml/gemma/cohere/llama3/phi_3/deepseek_v2/jamba: These chat templates are available in the axolotl codebase at src/axolotl/utils/chat_templates.py
-    # - tokenizer_default_fallback_*: where * is the name of the chat template to fallback to if the tokenizer does not have a chat template else default to tokenizer. E.g. tokenizer_default_fallback_chatml.
-    # - jinja: Uses a custom jinja template for the chat template. The custom jinja template should be provided in the chat_template_jinja field.
-    chat_template: tokenizer_default
-
-    # Custom jinja chat template. Used only if `chat_template: jinja` or empty.
-    chat_template_jinja:
-
-    # Key containing the messages (default: "messages")
-    field_messages: messages
-
-    # Mapping of properties from the input dataset to the chat template.
-    # (default: message_property_mappings={'role':'role', 'content':'content'})
-    # If a property exists in the template but not in this mapping, the system will attempt
-    # to load it directly from the message using the property name as the key.
-    # Example: In the mapping below, 'from' is loaded from input dataset and used as 'role',
-    # while 'value' is loaded and used as 'content' in the chat template.
-    message_property_mappings:
-      role: from
-      content: value
-      # ...
-
-    # Optional[Dict[str, List]]. Roles mapping in the messages. The default is:
-    roles:
-      user: ["human", "user"]
-      assistant: ["gpt", "assistant"]
-      system: ["system"]
-      tool: ["tool"]
-
-    # Optional[bool]. Whether to drop the system turn from the dataset. Only works with chat_template.
-    # This does not drop the default system message from chat_template if it exists. If you wish to,
-    # we recommend using a custom jinja template with the default system message removed or
-    # adding a system turn with empty content.
-    drop_system_message:
-
-    # IMPORTANT: The following fields determine which parts of the conversation to train on.
-    # Priority order: message_field_training > message_field_training_detail > train_on_inputs or role in roles_to_train
-    # See examples at `docs/dataset-formats/conversation.qmd`
-    # Note: If the below 4 fields are set to empty, defaults to training only on the last message.
-
-    # Optional[List[str]]. Roles to train on. The tokens from these roles will be considered for the loss.
-    roles_to_train: ["assistant"]  # default
-    # Optional[str]. Which EOS tokens to train on in the conversation. Possible values are:
-    # - all: train on all EOS tokens
-    # - turn (default): train on the EOS token at the end of each trainable turn
-    # - last: train on the last EOS token in the conversation
-    # TIP: Please make sure that your `tokenizer.eos_token` is same as EOS/EOT token in template. Otherwise, set `eos_token` under `special_tokens`.
-    train_on_eos: last
-    # The key in the message turn that indicates via boolean whether tokens of a turn should be considered for training. Useful to selectively train on certain turns besides the `roles_to_train`.
-    message_field_training: training
-    # The key in the message turn that contains the training details. Useful to selectively train on certain tokens in a turn.
-    # The value of the key is a List[Dict] containing `begin_offset` (start character index in content), `end_offset` (end character index in content), and `train` (boolean whether to train).
-    message_field_training_detail: train_detail
-
-
-# If false, the datasets will not be shuffled and will keep their original order in `datasets`.
-# The same applies to the `test_datasets` option and the `pretraining_dataset` option. Default is true.
-shuffle_merged_datasets: true
-
-Deduplicates datasets and test_datasets with identical entries.
-dataset_exact_deduplication: true
-
-# A list of one or more datasets to eval the model with.
-# You can use either test_datasets, or val_set_size, but not both.
-test_datasets:
-  - path: /workspace/data/eval.jsonl
-    ds_type: json
-    # You need to specify a split. For "json" datasets the default split is called "train".
-    split: train
-    type: completion
-    data_files:
-      - /workspace/data/eval.jsonl
-
-# use RL training: 'dpo', 'ipo', 'kto'
-rl:
-# whether to perform weighting if doing DPO training. Boolean.
-dpo_use_weighting:
-
-# reward modelling: `True` or `False`
-reward_model:
-
-# process reward modelling: `True` or `False`
-process_reward_model:
-
-# The name of the chat template to use for training, following values are supported:
-# - tokenizer_default: Uses the chat template that is available in the tokenizer_config.json. If the chat template is not available in the tokenizer, it will raise an error. This is the default value.
-# - alpaca/inst/chatml/gemma/cohere/llama3/phi_3/deepseek_v2/jamba: These chat templates are available in the axolotl codebase at src/axolotl/utils/chat_templates.py
-# - tokenizer_default_fallback_*: where * is the name of the chat template to fallback to. E.g. tokenizer_default_fallback_chatml. This is useful when the chat template is not available in the tokenizer.
-# - jinja: Uses a custom jinja template for the chat template. The custom jinja template should be provided in the chat_template_jinja field.
-# The selected chat template will be saved to the tokenizer_config.json for easier inferencing
-# Note: It is recommended to set train_on_inputs to true when using a chat template that is different from the model's default chat template.
-chat_template: tokenizer_default
-# custom jinja template for chat template. This will be only used if chat_template is set to `jinja` or `null` (in which case chat_template is automatically set to `jinja`). Default is null.
-chat_template_jinja: null
-# Changes the default system message. Currently only supports chatml.
-default_system_message: You are a helpful assistant. Please give a long and detailed answer.
-# Axolotl attempts to save the dataset as an arrow after packing the data together so
-# subsequent training attempts load faster, relative path
-dataset_prepared_path: data/last_run_prepared
-# Push prepared dataset to hub
-push_dataset_to_hub: # repo path
-# The maximum number of processes to use while preprocessing your input dataset. This defaults to `os.cpu_count()`
-# if not set.
-dataset_processes: # defaults to os.cpu_count() if not set
-# Keep dataset in memory while preprocessing
-# Only needed if cached dataset is taking too much storage
-dataset_keep_in_memory:
-# push checkpoints to hub
-hub_model_id: # private repo path to push finetuned model
-# how to push checkpoints to hub
-# https://huggingface.co/docs/transformers/v4.31.0/en/main_classes/trainer#transformers.TrainingArguments.hub_strategy
-hub_strategy:
-# Whether to use hf `use_auth_token` for loading datasets. Useful for fetching private datasets
-# Required to be true when used in combination with `push_dataset_to_hub`
-hf_use_auth_token: # boolean
-# How much of the dataset to set aside as evaluation. 1 = 100%, 0.50 = 50%, etc. 0 for no eval.
-val_set_size: 0.04
-# Num shards for whole dataset
-dataset_shard_num:
-# Index of shard to use for whole dataset
-dataset_shard_idx:
-
-# The maximum length of an input to train with, this should typically be less than 2048
-# as most models have a token/context limit of 2048
-sequence_len: 2048
-# Pad inputs so each step uses constant sized buffers
-# This will reduce memory fragmentation and may prevent OOMs, by re-using memory more efficiently
-pad_to_sequence_len:
-# Use efficient multi-packing with block diagonal attention and per sequence position_ids. Recommend set to 'true'
-sample_packing:
-# Set to 'false' if getting errors during eval with sample_packing on.
-eval_sample_packing:
-# You can set these packing optimizations AFTER starting a training at least once.
-# The trainer will provide recommended values for these values.
-sample_packing_eff_est:
-total_num_tokens:
-# Increasing the following values helps with packing, but usually only slightly (<%1.)
-# The number of samples packed at a time.
-sample_packing_group_size: 100000
-# The number of samples which can be packed into one sequence. Increase if using a large sequence_len with many short samples.
-sample_packing_bin_size: 200
-# whether to concatenate samples during pretraining
-pretraining_sample_concatenation:
-
-# Use batch flattening for speedups when not using sample_packing
-batch_flattening:
-
-# Passed through to transformers when loading the model when launched without accelerate
-# Use `sequential` when training w/ model parallelism to limit memory
-device_map:
-# Defines the max memory usage per gpu on the system. Passed through to transformers when loading the model.
-max_memory:
-
-# If you want to use 'lora' or 'qlora' or leave blank to train all parameters in original model
-adapter: lora
-# If you already have a lora model trained that you want to load, put that here.
-# This means after training, if you want to test the model, you should set this to the value of `output_dir`.
-# Note that if you merge an adapter to the base model, a new subdirectory `merged` will be created under the `output_dir`.
-lora_model_dir:
-
-# LoRA hyperparameters
-# For more details about the following options, see:
-# https://www.anyscale.com/blog/fine-tuning-llms-lora-or-full-parameter-an-in-depth-analysis-with-llama-2
-lora_r: 8
-lora_alpha: 16
-lora_dropout: 0.05
-lora_target_modules:
-  - q_proj
-  - v_proj
-#  - k_proj
-#  - o_proj
-#  - gate_proj
-#  - down_proj
-#  - up_proj
-lora_target_linear: # If true, will target all linear modules
-peft_layers_to_transform: # The layer indices to transform, otherwise, apply to all layers
-
-# If you added new tokens to the tokenizer, you may need to save some LoRA modules because they need to know the new tokens.
-# For LLaMA and Mistral, you need to save `embed_tokens` and `lm_head`. It may vary for other models.
-# `embed_tokens` converts tokens to embeddings, and `lm_head` converts embeddings to token probabilities.
-# https://github.com/huggingface/peft/issues/334#issuecomment-1561727994
-lora_modules_to_save:
-#  - embed_tokens
-#  - lm_head
-
-lora_fan_in_fan_out: false
-
-# Apply custom LoRA autograd functions and activation function Triton kernels for
-# speed and memory savings
-# See: https://axolotl-ai-cloud.github.io/axolotl/docs/lora_optims.html
-lora_mlp_kernel: true
-lora_qkv_kernel: true
-lora_o_kernel: true
-
-# LoRA+ hyperparameters
-# For more details about the following options, see:
-# https://arxiv.org/abs/2402.12354  and `src/axolotl/core/train_builder.py`
-loraplus_lr_ratio: # loraplus learning rate ratio lr_B / lr_A. Recommended value is 2^4.
-loraplus_lr_embedding: #  loraplus learning rate for lora embedding layers. Default value is 1e-6.
-
-peft:
-  # Configuration options for loftq initialization for LoRA
-  # https://huggingface.co/docs/peft/developer_guides/quantization#loftq-initialization
-  loftq_config:
-    loftq_bits:  # typically 4 bits
-
-# ReLoRA configuration
-# Must use either 'lora' or 'qlora' adapter, and does not support fsdp or deepspeed
-relora_steps: # Number of steps per ReLoRA restart
-relora_warmup_steps: # Number of per-restart warmup steps
-relora_anneal_steps: # Number of anneal steps for each relora cycle
-relora_prune_ratio: # threshold for optimizer magnitude when pruning
-relora_cpu_offload: # True to perform lora weight merges on cpu during restarts, for modest gpu memory savings
-
-# wandb configuration if you're using it
-# Make sure your `WANDB_API_KEY` environment variable is set (recommended) or you login to wandb with `wandb login`.
-wandb_mode: # "offline" to save run metadata locally and not sync to the server, "disabled" to turn off wandb
-wandb_project: # Your wandb project name
-wandb_entity: # A wandb Team name if using a Team
-wandb_watch:
-wandb_name: # Set the name of your wandb run
-wandb_run_id: # Set the ID of your wandb run
-wandb_log_model: # "checkpoint" to log model to wandb Artifacts every `save_steps` or "end" to log only at the end of training
-
-# mlflow configuration if you're using it
-mlflow_tracking_uri: # URI to mlflow
-mlflow_experiment_name: # Your experiment name
-mlflow_run_name: # Your run name
-hf_mlflow_log_artifacts:  # set to true to copy each saved checkpoint on each save to mlflow artifact registry
-
-# Comet configuration if you're using it
-# Make sure your `COMET_API_KEY` environment variable is set (recommended) or you login to Comet with `comet login`.
-# Check out our documentation for more details https://www.comet.com/docs/v2/api-and-sdk/python-sdk/reference/Experiment-Creation/#comet_ml.start
-use_comet: # Enable or disable Comet integration.
-comet_api_key: # API key for Comet. Recommended to set via `comet login`.
-comet_workspace: # Workspace name in Comet. Defaults to the user's default workspace.
-comet_project_name: # Project name in Comet. Defaults to Uncategorized.
-comet_experiment_key: # Identifier for the experiment. Used to append data to an existing experiment or control the key of new experiments. Default to a random key.
-comet_mode: # Create a new experiment ("create") or log to an existing one ("get"). Default ("get_or_create") auto-selects based on configuration.
-comet_online: # Set to True to log data to Comet server, or False for offline storage. Default is True.
-comet_experiment_config: # Dictionary for additional configuration settings, see the doc for more details.
-
-# Tensorboard
-use_tensorboard: # Optional[bool]
-
-# Where to save the full-finetuned model to
-output_dir: ./completed-model
-
-# Whether to use torch.compile and which backend to use
-# setting to `auto` will enable torch compile when torch>=2.5.1
-torch_compile:  # Optional[Union[Literal["auto"], bool]]
-torch_compile_backend:  # Optional[str]
-
-# Training hyperparameters
-
-# If greater than 1, backpropagation will be skipped and the gradients will be accumulated for the given number of steps.
-gradient_accumulation_steps: 1
-# The number of samples to include in each batch. This is the number of samples sent to each GPU.
-# Batch size per gpu = micro_batch_size * gradient_accumulation_steps
-micro_batch_size: 2
-eval_batch_size:
-num_epochs: 4
-warmup_steps: 100  # cannot use with warmup_ratio
-warmup_ratio: 0.05  # cannot use with warmup_steps
-learning_rate: 0.00003
-lr_quadratic_warmup:
-logging_steps:
-eval_steps: # Leave empty to eval at each epoch, integer for every N steps. float for fraction of total steps
-evals_per_epoch: # number of times per epoch to run evals, mutually exclusive with eval_steps
-eval_strategy: # Set to `"no"` to skip evaluation, `"epoch"` at end of each epoch, leave empty to infer from `eval_steps`.
-save_strategy: # Set to `"no"` to skip checkpoint saves, `"epoch"` at end of each epoch, `"best"` when better result is achieved, leave empty to infer from `save_steps`.
-save_steps: # Leave empty to save at each epoch, integer for every N steps. float for fraction of total steps
-saves_per_epoch: # number of times per epoch to save a checkpoint, mutually exclusive with save_steps
-save_total_limit: # Checkpoints saved at a time
-# Maximum number of iterations to train for. It precedes num_epochs which means that
-# if both are set, num_epochs will not be guaranteed.
-# e.g., when 1 epoch is 1000 steps => `num_epochs: 2` and `max_steps: 100` will train for 100 steps
-max_steps:
-
-# bool of whether to include tokens trainer per second in the training metrics. This iterates over the entire dataset once, so it takes some time.
-include_tokens_per_second: # Optional[bool]
-
-# whether to find batch size that fits in memory. Passed to underlying transformers Trainer
-auto_find_batch_size: # Optional[bool]
-
-eval_table_size: # Approximate number of predictions sent to wandb depending on batch size. Enabled above 0. Default is 0
-eval_max_new_tokens: # Total number of tokens generated for predictions sent to wandb. Default is 128
-eval_causal_lm_metrics: # HF evaluate metrics used during evaluation. Default is ["sacrebleu", "comet", "ter", "chrf", "perplexity"]
-
-profiler_steps: # enable the pytorch profiler to capture the first N steps of training to the output_dir.
-                # see https://pytorch.org/blog/understanding-gpu-memory-1/ for more information
-                # snapshots can be visualized @ https://pytorch.org/memory_viz
-
-loss_watchdog_threshold: # High loss value, indicating the learning has broken down (a good estimate is ~2 times the loss at the start of training)
-loss_watchdog_patience: # Number of high-loss steps in a row before the trainer aborts (default: 3)
-
-# Save model as safetensors (require safetensors package)
-save_safetensors:
-
-# Whether to mask out or include the human's prompt from the training labels
-train_on_inputs: false
-# Group similarly sized data to minimize padding.
-# May be slower to start, as it must download and sort the entire dataset.
-# Note that training loss may have an oscillating pattern with this enabled.
-group_by_length: false
-
-# Whether to use gradient checkpointing https://huggingface.co/docs/transformers/v4.18.0/en/performance#gradient-checkpointing
-gradient_checkpointing: false
-# additional kwargs to pass to the trainer for gradient checkpointing
-# gradient_checkpointing_kwargs:
-#   use_reentrant: true
-
-# Stop training after this many evaluation losses have increased in a row
-# https://huggingface.co/transformers/v4.2.2/_modules/transformers/trainer_callback.html#EarlyStoppingCallback
-early_stopping_patience: 3
-
-# Specify a scheduler and kwargs to use with the optimizer
-lr_scheduler: # 'one_cycle' | 'rex' | 'log_sweep' | empty for cosine
-lr_scheduler_kwargs:
-cosine_min_lr_ratio: # decay lr to some percentage of the peak lr, e.g. cosine_min_lr_ratio=0.1 for 10% of peak lr
-cosine_constant_lr_ratio: # freeze lr at some percentage of the step, e.g. cosine_constant_lr_ratio=0.8 means start cosine_min_lr at 80% of training step (https://arxiv.org/pdf/2308.04014.pdf)
-
-# For one_cycle optim
-lr_div_factor: # Learning rate div factor
-
-# Specify optimizer
-# Valid values are driven by the Transformers OptimizerNames class, see:
-# https://github.com/huggingface/transformers/blob/95b374952dc27d8511541d6f5a4e22c9ec11fb24/src/transformers/training_args.py#L134
-#
-# Note that not all optimizers may be available in your environment, ex: 'adamw_anyprecision' is part of
-# torchdistx, 'adamw_bnb_8bit' is part of bnb.optim.Adam8bit, etc. When in doubt, it is recommended to start with the optimizer used
-# in the examples/ for your model and fine-tuning use case.
-#
-# Valid values for 'optimizer' include:
-# - adamw_hf
-# - adamw_torch
-# - adamw_torch_fused
-# - adamw_torch_xla
-# - adamw_apex_fused
-# - adopt_adamw (an EXPERIMENTAL optimizer, only for torch version >= 2.5.1)
-# - adafactor
-# - adamw_anyprecision
-# - sgd
-# - adagrad
-# - adamw_bnb_8bit
-# - lion_8bit
-# - lion_32bit
-# - paged_adamw_32bit
-# - paged_adamw_8bit
-# - paged_lion_32bit
-# - paged_lion_8bit
-# - galore_adamw
-# - galore_adamw_8bit
-# - galore_adafactor
-# - galore_adamw_layerwise
-# - galore_adamw_8bit_layerwise
-# - galore_adafactor_layerwise
-optimizer:
-# Dictionary of arguments to pass to the optimizer
-optim_args:
-# For Galore Optimizers the following optim_args are available
-# rank:  # type: int
-# update_proj_gap  # type: int
-# scale  # type: float
-# proj_type:  # type: str, default = std
-
-# The target modules to optimize, i.e. the module names that you would like to train, right now this is used only for GaLore algorithm
-optim_target_modules:
-# - self_attn  # for llama
-# - mlp
-
-# Specify weight decay
-weight_decay:
-# adamw hyperparams
-adam_beta1:
-adam_beta2:
-adam_epsilon:
-# Gradient clipping max norm
-max_grad_norm:
-
-# Augmentation techniques
-# NEFT https://arxiv.org/abs/2310.05914, set this to a number (paper default is 5) to add noise to embeddings
-# currently only supported on Llama and Mistral
-neftune_noise_alpha:
-
-# Whether to bettertransformers
-flash_optimum:
-# Whether to use xformers attention patch https://github.com/facebookresearch/xformers:
-xformers_attention:
-# Whether to use flash attention patch https://github.com/Dao-AILab/flash-attention:
-flash_attention:
-flash_attn_cross_entropy:  # Whether to use flash-attention cross entropy implementation - advanced use only
-flash_attn_rms_norm:  # Whether to use flash-attention rms norm implementation - advanced use only
-flash_attn_fuse_qkv: # Whether to fuse QKV into a single operation
-flash_attn_fuse_mlp: # Whether to fuse part of the MLP into a single operation
-# Whether to use scaled-dot-product attention
-# https://pytorch.org/docs/stable/generated/torch.nn.functional.scaled_dot_product_attention.html
-sdp_attention:
-# Shifted-sparse attention (only llama) - https://arxiv.org/pdf/2309.12307.pdf
-s2_attention:
-# Optional[bool]. Whether to use low_cpu_mem_usage
-low_cpu_mem_usage:
-# Resume from a specific checkpoint dir
-resume_from_checkpoint:
-# If resume_from_checkpoint isn't set and you simply want it to start where it left off.
-# Be careful with this being turned on between different models.
-auto_resume_from_checkpoints: false
-
-# Don't mess with this, it's here for accelerate and torchrun
-local_rank:
-
-# Add or change special tokens.
-# If you add tokens here, you don't need to add them to the `tokens` list.
-special_tokens:
-  # bos_token: "<s>"
-  # eos_token: "</s>"
-  # unk_token: "<unk>"
-  # pad_token: "[PAD]"
-
-# Add extra tokens.
-tokens:
-
-# Mapping token_id to new_token_string to override reserved added_tokens in the tokenizer.
-# Only works for tokens that are not part of the base vocab (aka are added_tokens).
-# Can be checked if they exist in tokenizer.json added_tokens.
-added_tokens_overrides:  # Dict[int, str]
-#  128041: "<|im_start|>"
-#  128042: "<|im_end|>"
-
-# FSDP
-fsdp:
-fsdp_config:
-
-# Deepspeed config path. e.g., deepspeed_configs/zero3.json
-deepspeed:
-
-# Advanced DDP Arguments
-ddp_timeout:
-ddp_bucket_cap_mb:
-ddp_broadcast_buffers:
-
-# Path to torch distx for optim 'adamw_anyprecision'
-torchdistx_path:
-
-# Set to HF dataset for type: 'completion' for streaming instead of pre-tokenize
-pretraining_dataset:
-
-# Debug mode
-debug:
-
-# Seed
-seed:
-
-# Allow overwrite yml config using from cli
-strict:
-```

docs/custom_integrations.qmd

@@ -7,6 +7,7 @@ toc-depth: 3
 ```{python}
 #| echo: false
 
+import os
 import re
 
 def process_readme(integration_name):
@@ -49,9 +50,72 @@ sections = [
     ("Knowledge Distillation (KD)", "kd"),
     ("Liger Kernels", "liger"),
     ("Language Model Evaluation Harness (LM Eval)", "lm_eval"),
-    ("Spectrum", "spectrum")
+    ("Spectrum", "spectrum"),
+    ("LLMCompressor", "llm_compressor")
 ]
 
+for folder_name in os.listdir("../src/axolotl/integrations/"):
+    if folder_name in [path for name, path in sections]:
+        # skip if already in sections
+        continue
+    if os.path.exists(f"../src/axolotl/integrations/{folder_name}/README.md"):
+        # grab the first heading in README.md as the section name
+        with open(f"../src/axolotl/integrations/{folder_name}/README.md", "r") as f:
+            txt = f.read()
+            matches = re.search(r'^# (.*)\n?', txt, flags=re.MULTILINE)
+            if matches:
+                name = matches.group(1)
+            else:
+                continue
+            sections.append((name, folder_name))
+
+# sort sections by name
+sections = sorted(sections, key=lambda x: x[0])
+
 for section_name, folder_name in sections:
     print(print_section(section_name, folder_name))
 ```
+
+## Adding a new integration
+
+Plugins can be used to customize the behavior of the training pipeline through [hooks](https://en.wikipedia.org/wiki/Hooking). See [`axolotl.integrations.BasePlugin`](https://github.com/axolotl-ai-cloud/axolotl/blob/main/src/axolotl/integrations/base.py) for the possible hooks.
+
+To add a new integration, please follow these steps:
+
+1. Create a new folder in the `src/axolotl/integrations` directory.
+2. Add any relevant files (`LICENSE`, `README.md`, `ACKNOWLEDGEMENTS.md`, etc.) to the new folder.
+3. Add `__init__.py` and `args.py` files to the new folder.
+  - `__init__.py` should import the integration and hook into the appropriate functions.
+  - `args.py` should define the arguments for the integration.
+4. (If applicable) Add CPU tests under `tests/integrations` or GPU tests under `tests/e2e/integrations`.
+
+::: {.callout-tip}
+
+See [src/axolotl/integrations/cut_cross_entropy](https://github.com/axolotl-ai-cloud/axolotl/tree/main/src/axolotl/integrations/cut_cross_entropy) for a minimal integration example.
+
+:::
+
+::: {.callout-warning}
+
+If you could not load your integration, please ensure you are pip installing in editable mode.
+
+```bash
+pip install -e .
+```
+
+and correctly spelled the integration name in the config file.
+
+```yaml
+plugins:
+  - axolotl.integrations.your_integration_name.YourIntegrationPlugin
+```
+
+:::
+
+::: {.callout-note}
+
+It is not necessary to place your integration in the `integrations` folder. It can be in any location, so long as it's installed in a package in your python env.
+
+See this repo for an example: [https://github.com/axolotl-ai-cloud/diff-transformer](https://github.com/axolotl-ai-cloud/diff-transformer)
+
+:::

docs/dataset-formats/conversation.qmd

@@ -4,27 +4,15 @@ description: Conversation format for supervised fine-tuning.
 order: 3
 ---
 
-## sharegpt
-
-::: {.callout-important}
-ShareGPT is deprecated!. Please see [chat_template](#chat_template) section below.
-:::
-
-## pygmalion
-
-```{.json filename="data.jsonl"}
-{"conversations": [{"role": "...", "value": "..."}]}
-```
-
 ## chat_template
 
 Chat Template strategy uses a jinja2 template that converts a list of messages into a prompt. Support using tokenizer's template, a supported template, or custom jinja2.
 
 ```{.json filename="data.jsonl"}
-{"conversations": [{"role": "...", "content": "..."}]}
+{"messages": [{"role": "...", "content": "..."}, {"role": "...", "content": "..."}, ...]}
 ```
 
-See [configs](../config.qmd) for full configs and supported templates.
+See [configs](../config-reference.qmd) for full configs and supported templates.
 
 ### Migrating from sharegpt
 
@@ -64,7 +52,9 @@ We recommend checking the below examples for other usecases.
 
 ### Examples
 
-1. Using the default chat template in the tokenizer_config.json on OpenAI messages format, training on only last message.
+#### Training on last message
+
+(Legacy) Using the default chat template in the tokenizer_config.json on OpenAI messages format, training on only last message.
 
 ```yaml
 datasets:
@@ -78,7 +68,9 @@ datasets:
 If you receive an error like "`chat_template` choice is `tokenizer_default` but tokenizer's `chat_template` is null.", it means the tokenizer does not have a default `chat_template`. Follow the examples below instead to set a custom `chat_template`.
 :::
 
-2. Using the `gemma` chat template to override the tokenizer_config.json's chat template on OpenAI messages format, training on all assistant messages.
+#### Overriding default chat template
+
+Using the `gemma` chat template to override the tokenizer_config.json's chat template on OpenAI messages format, training on all assistant messages.
 
 ```yaml
 chat_template: gemma # this overwrites the tokenizer's chat_template
@@ -88,7 +80,13 @@ datasets:
     roles_to_train: ["assistant"]  # default value
 ```
 
-3. Using the tokenizer_config.json's chat template or `chatml` as fallback if the former's chat template does not exist, on OpenAI messages format, training on all assistant messages.
+::: {.callout-note}
+If you want to use built-in chat_template, use `chat_template: tokenizer_default` (this is set by default).
+:::
+
+#### Using default chat template with fallback
+
+Using the tokenizer_config.json's chat template or `chatml` as fallback if the former's chat template does not exist, on OpenAI messages format, training on all assistant messages.
 
 ```yaml
 chat_template: tokenizer_default_fallback_chatml # this overwrites the tokenizer's chat_template
@@ -97,7 +95,9 @@ datasets:
     type: chat_template
 ```
 
-4. Using a custom jinja template on OpenAI messages format, training on all assistant messages.
+#### Custom Jinja template
+
+Using a custom jinja template on OpenAI messages format, training on all assistant messages.
 
 ```yaml
 # chat_template: jinja # `jinja` will be implied if the `chat_template_jinja` is set and this field is empty
@@ -108,11 +108,150 @@ datasets:
     type: chat_template
 ```
 
-::: {.callout-important}
-Please make sure that your `tokenizer.eos_token` is same as EOS/EOT token in template. Otherwise, set `eos_token` under `special_tokens`.
+::: {.callout-tip}
+`chat_template_jinja` also accepts a file path to a `.jinja2` file instead of an inline string:
+
+```yaml
+chat_template_jinja: ./path/to/my_template.jinja2
+```
 :::
 
-5. (Advanced) Using fine-grained control over tokens and turns to train in a conversation
+::: {.callout-important}
+Please make sure that your `tokenizer.eos_token` is same as EOS (End-of-Sequence) token in template. Otherwise, set `eos_token` under `special_tokens: `.
+:::
+
+#### Using template with different token for EOT and EOS
+
+- If you are using a template that has a different EOT (End-of-Turn) token from EOS token or multiple EOT tokens (like Mistral V7 Tekken), set the `eot_tokens: ` config. The handling of EOT tokens follows `train_on_eos: ` which defaults to turn.
+
+```yaml
+eot_tokens:
+  - "[/INST]"
+  # - "[/SYSTEM_PROMPT]"
+
+datasets:
+  - path: ...
+    type: chat_template
+
+    # optional
+    train_on_eot: turn  # defaults read from train_on_eos (which defaults to turn)
+```
+
+::: {.callout-tip}
+See [config documentation](../config-reference.qmd) for detailed explanations of "turn", "last", and "all" options for training on tokens.
+:::
+
+::: {.callout-note}
+Using `eot_tokens` requires each token that exists in `chat_template` to be a single token in the tokenizer. Otherwise, the tokenizer will split the token and cause unexpected behavior.
+
+You can add those tokens as new tokens under `tokens: ` or (recommended) override unused added_tokens via `added_tokens_overrides: `. See [config](../config-reference.qmd) for more details.
+:::
+
+- Continuing from the previous example, if you want to train on all EOT token trainable turns but only last EOS token, set `train_on_eos: last`.
+
+```yaml
+eot_tokens:
+  - "[/INST]"
+  # ...
+
+datasets:
+  - path: ...
+    type: chat_template
+
+    train_on_eos: last
+    train_on_eot: turn
+```
+
+::: {.callout-tip}
+If EOS token only appears at the end of a prompt, `train_on_eos: last` is equivalent to `train_on_eos: turn`. Therefore, generally, you can leave them to their defaults and omit them.
+:::
+
+
+#### Using tool use
+
+Instead of passing `tools` via the system prompt, an alternative method would be to have the `tools` in a separate column and loaded via `chat_template` to let the template dynamically build it.
+
+```json
+{
+    "tools": [
+        {
+            "type": "...",
+            "function": {
+                "name": "...",
+                "description": "...",
+                "parameters": {
+                    "type": "...",
+                    "properties": {
+                        // ...
+                    },
+                    "required": ["..."],
+                },
+            },
+        },
+    ],
+    "messages": [
+        // ...
+        {
+            "role": "assistant", // call the function via assistant
+            "tool_calls": [
+                {
+                    "id": "...",  // required only for mistral
+                    "type": "function",
+                    "function": {
+                        "name": "...",
+                        "arguments": {
+                            "...": "...",
+                        }
+                    }
+                }
+            ]
+        },
+        {
+            "role": "tool",
+            "tool_call_id": "...",  // required only for mistral
+            "name": "...",
+            "content": "..."
+        },
+    ],
+}
+```
+
+::: {.callout-note}
+Tools need to follow [JSON schema](https://json-schema.org/learn/getting-started-step-by-step).
+:::
+
+::: {.callout-warning}
+If you have tool arguments with same name but different dtypes (like `"time": string` and `"time": number`), please save `arguments: ` as JSON string to prevent `datasets` from having casting issues.
+
+```
+"arguments": "{\"...\": \"...\"}"
+```
+
+The same is applicable for tool parameters.
+
+```
+"parameters": "{\"...\": \"...\"}"
+```
+
+:::
+
+Example config for Llama4:
+```yaml
+chat_template: llama4
+datasets:
+  - path: Nanobit/text-tools-2k-test
+    type: chat_template
+    # field_tools: tools # default is `tools`
+```
+
+::: {.callout-tip}
+Look into the `chat_template` you are using to see if it supports `tools` and what the expected role is for the tool answer. In the example above, the tool answer is expected to be in the `tool` or `ipython` role for `llama4` template.
+:::
+
+
+#### Using fine-grained control over token masking
+
+(Advanced) Using fine-grained control over tokens and turns to train in a conversation
 
 For a data sample that looks like:
 
@@ -162,3 +301,152 @@ datasets:
 ::: {.callout-tip}
 It is not necessary to set both `message_field_training` and `message_field_training_detail` at once.
 :::
+
+#### Content parts with per-part training control
+
+Instead of using character offsets with `train_detail`, you can split a message's content into a list of parts, each with its own training flag. This is useful when you want to mask specific sections of a response (e.g., mask reasoning but train on the answer).
+
+```{.json filename="data.jsonl"}
+{
+  "messages": [
+    {"role": "user", "content": [{"type": "text", "text": "What is 2+2?"}]},
+    {
+      "role": "assistant",
+      "content": [
+        {"type": "text", "text": "Let me think step by step...", "train": false},
+        {"type": "text", "text": " The answer is 4.", "train": true}
+      ]
+    }
+  ]
+}
+```
+
+The configuration is the same as standard `chat_template` — no extra fields needed:
+
+```yaml
+datasets:
+  - path: ...
+    type: chat_template
+    roles_to_train: ["assistant"]
+```
+
+Each content part supports:
+
+- `type`: `"text"` (required)
+- `text`: the text value (also accepts `content` or `value` as the key)
+- `train`: `true`/`false` (optional) — whether to train on this part
+- `weight`: `0`/`1` (optional) — alternative to `train`
+
+If a part has no `train` or `weight` flag, it inherits the turn-level training decision (from `roles_to_train`, `message_field_training`, or `train_on_inputs`).
+
+::: {.callout-warning title="Whitespace at part boundaries"}
+BPE tokenizers (used by Llama, Qwen, Mistral, GPT, etc.) prepend spaces to word tokens. For example, `" answer"` is a single token — the space is part of it. This means **where you place whitespace between content parts matters**:
+
+**Split BEFORE spaces** (space goes with the next part):
+
+```json
+[
+  {"type": "text", "text": "Let me think...", "train": false},
+  {"type": "text", "text": " The answer is 4.", "train": true}
+]
+```
+
+**DON'T put trailing spaces** on a part (the space merges with the next word into one token that straddles the boundary, and straddling tokens are masked):
+
+```json
+[
+  {"type": "text", "text": "Let me think... ", "train": false},
+  {"type": "text", "text": "The answer is 4.", "train": true}
+]
+```
+
+In the bad example, `" The"` becomes a single token that spans both parts. Because it straddles the boundary, it is conservatively **masked** (not trained) — even though the second part has `train: true`.
+
+**Newlines** typically merge with preceding punctuation (e.g., `":\n"` is one token). Keep newlines with the preceding part:
+
+```json
+[
+  {"type": "text", "text": "Thinking:\n", "train": false},
+  {"type": "text", "text": "The answer is 4.", "train": true}
+]
+```
+
+Axolotl will log a warning if it detects trailing whitespace at a boundary between parts with different training flags.
+:::
+
+::: {.callout-note}
+When all content parts in a message are strings, they are concatenated before being passed to the chat template. This means content parts work with **any** Jinja template — the template sees a plain string, and the per-part training flags are applied during tokenization.
+:::
+
+##### Per-part training on reasoning_content
+
+For templates that support a separate `reasoning_content` field (e.g., `qwen3`), the same content-parts format works on `reasoning_content`. This is useful for masking incorrect reasoning steps while training on self-corrections:
+
+```{.json filename="data.jsonl"}
+{
+  "messages": [
+    {"role": "user", "content": [{"type": "text", "text": "What is 2+2?"}]},
+    {
+      "role": "assistant",
+      "reasoning_content": [
+        {"type": "text", "text": "Hmm maybe 2+2=5.", "train": false},
+        {"type": "text", "text": " Wait no, 2+2=4.", "train": true}
+      ],
+      "content": [
+        {"type": "text", "text": "The answer is 4.", "train": true}
+      ]
+    }
+  ]
+}
+```
+
+The `reasoning_content` and `content` fields are handled independently — each has its own token boundaries and per-part masking. No additional configuration is needed beyond what the template already requires.
+
+::: {.callout-tip}
+When `reasoning_content` is provided as a separate field, `split_thinking` is not needed — the reasoning is already separated from the content in the data.
+:::
+
+The same whitespace rules apply to `reasoning_content` parts as to `content` parts — split before spaces, keep newlines with the preceding part.
+
+
+#### Reasoning split
+
+(For Qwen3 template only) Enable reasoning split, where the reasoning is split from the content and passed as a separate field into the template.
+
+```yaml
+datasets:
+  - path: ...
+    type: chat_template
+    chat_template: qwen3
+    split_thinking: true
+```
+
+For example, a content can look like:
+
+```json
+{
+  "content": "<think>Some thinking outputs</think>Output after thinking."
+}
+```
+
+After split, it will look like:
+
+```json
+{
+  "reasoning_content": "Some thinking outputs",
+  "content": "Output after thinking..."
+}
+```
+
+
+## sharegpt
+
+::: {.callout-important}
+ShareGPT is deprecated!. Please see [chat_template](#chat_template) section.
+:::
+
+## pygmalion
+
+```{.json filename="data.jsonl"}
+{"conversations": [{"role": "...", "value": "..."}]}
+```

docs/dataset-formats/index.qmd

@@ -13,92 +13,55 @@ As there are a lot of available options in Axolotl, this guide aims to provide a
 
 Axolotl supports 3 kinds of training methods: pre-training, supervised fine-tuning, and preference-based post-training (e.g. DPO, ORPO, PRMs). Each method has their own dataset format which are described below.
 
+::: {.callout-tip}
+
+This guide will mainly use JSONL as an introduction. Please refer to the [dataset loading docs](../dataset_loading.qmd) to understand how to load datasets from other sources.
+
+For `pretraining_dataset:` specifically, please refer to the [Pre-training section](#pre-training).
+:::
+
 ## Pre-training
 
-When aiming to train on large corpora of text datasets, pre-training is your go-to choice. Due to the size of these datasets, downloading the entire-datasets before beginning training would be prohibitively time-consuming. Axolotl supports [streaming](https://huggingface.co/docs/datasets/en/stream) to only load batches into memory at a time.
-
-A sample format for a pre-training dataset is as follows:
+Pre-training trains on raw text corpora with no input masking. The dataset format is simple:
 
 ```json
 {"text": "first row"}
 {"text": "second row"}
-...
 ```
 
-It is typically recommended to save your dataset as `.jsonl` due to its flexibility and simplicity.
+Axolotl supports two approaches:
 
-Axolotl supports loading from a Hugging Face hub repo or from local files.
+### Streaming (large datasets)
 
-::: {.callout-important}
-For pre-training only, Axolotl would split texts if it exceeds the context length into multiple smaller prompts.
-:::
-
-### Pre-training from Hugging Face hub datasets
-
-As an example, to train using a Hugging Face dataset `hf_org/name`, you can pass the following config:
-
-```yaml
-pretraining_dataset: hf_org/name
-```
-
-### Pre-training from local dataset files
-
-Given a few corpus files: `A.jsonl`, `B.jsonl`, and `C.jsonl`, your config will look like the below:
+For large corpora that don't fit in memory, use `pretraining_dataset` with [streaming](../streaming.qmd). Data is tokenized on-demand during training.
 
 ```yaml
 pretraining_dataset:
-  - path: json
-    data_files:
-      - A.jsonl
-      - B.jsonl
-      - C.jsonl
+  - path: HuggingFaceFW/fineweb-edu
+    type: pretrain
+    text_column: text
+    split: train
 ```
 
-While we recommend `.jsonl`, you can also use the other formats (`csv`, `parquet`, `arrow`, `SQL`, `Webdataset`) that are supported by [`Dataset.load_dataset`](https://huggingface.co/docs/datasets/loading#local-and-remote-files)
+::: {.callout-important}
+Streaming requires `max_steps` in your config — Axolotl cannot infer the dataset size. One step = `sequence_len * micro_batch_size * gradient_accumulation_steps * num_gpus` tokens.
+:::
 
-### Pre-training without streaming
+See [Streaming Datasets](../streaming.qmd) for full configuration details.
 
-On the rare case that the dataset is small and can be loaded entirely into memory, another approach to running pre-training is to use the `completion` format. This would mean that the entire dataset is pre-tokenized instead of on-demand in streaming.
+### Non-streaming (smaller datasets)
 
-One benefit of this is that the tokenization can be performed separately on a CPU-only machine, and then transferred to a GPU machine for training to save costs.
-
-From Hugging Face:
+For datasets that fit in memory, use `type: completion` under `datasets:`. The entire dataset is pre-tokenized before training, which can be done on a CPU-only machine.
 
 ```yaml
 datasets:
-  - path: hf_org/name
+  - path: my_corpus
     type: completion
 ```
 
-From local files (either example works):
-
-```yaml
-datasets:
-  - path: A.jsonl
-    type: completion
-
-  - path: json
-    data_files: ["A.jsonl", "B.jsonl", "C.jsonl"]
-    type: completion
-```
-
-### Pre-training dataset configuration tips
-
-#### Setting max_steps
-
-When using streaming for large datasets, Axolotl does not know in advance how large the dataset is and does not know when to stop.
-
-Therefore, it is necessary to set `max_steps: int` in your config for pre-training to run, so that Axolotl knows when to stop training.
-
-One step is equal to `sequence_len * micro_batch_size * gradient_accumulation_steps * total_num_gpus` tokens.
-
-#### Group_by_length
-
-It is recommended to leave this off if downloading from Hugging Face hub as it would download the entire dataset which can be very large.
-
-### Reference
-
-Please see docs [here](pretraining.qmd).
+::: {.callout-note}
+With `completion`, texts exceeding `sequence_len` are split into multiple samples automatically.
+:::
 
 ## Supervised fine-tuning (SFT)
 
@@ -450,10 +413,7 @@ datasets:
     type: alpaca
 ```
 
-Axolotl supports many kinds of instruction dataset. All of them can be found here (https://axolotl-ai-cloud.github.io/axolotl/docs/dataset-formats/inst_tune.html) with their respective type and sample row format.
-
-
-Reference: [Instruction Dataset Documentation](inst_tune.qmd).
+Axolotl supports many kinds of instruction dataset. All of them can be found in the [Instruction Dataset Documentation](inst_tune.qmd) with their respective type and sample row format.
 
 #### Custom Instruct Prompt Format
 

docs/dataset-formats/inst_tune.qmd

@@ -186,4 +186,4 @@ datasets:
       no_input_format: "[INST] {instruction} [/INST]"
 ```
 
-See full config options under [here](../config.qmd).
+See full config options under [here](../config-reference.qmd).

docs/dataset-formats/pretraining.qmd

@@ -4,29 +4,9 @@ description: Data format for a pre-training completion task.
 order: 1
 ---
 
-For pretraining, there is no prompt template or roles.  The only required field is `text`:
-
-```{.json filename="data.jsonl"}
-{"text": "first row"}
-{"text": "second row"}
-...
-```
-
-:::{.callout-note}
-
-### Streaming is recommended for large datasets
-
-Axolotl usually loads the entire dataset into memory. This will be challenging for large datasets. Use the following config to enable streaming:
-
-```{.yaml filename="config.yaml"}
-pretraining_dataset:
-  - name:
-    path:
-    split:
-    text_column: # column in dataset with the data, usually `text`
-    type: pretrain
-    trust_remote_code:
-    skip: # number of rows of data to skip over from the beginning
-```
+::: {.callout-note}
+Pre-training documentation has been consolidated:
 
+- **Streaming pretraining** (large datasets): See [Streaming Datasets](../streaming.qmd#pretraining-with-streaming)
+- **Non-streaming pretraining** (`type: completion`): See [Dataset Formats](index.qmd#pre-training)
 :::

docs/dataset_loading.qmd

@@ -0,0 +1,268 @@
+---
+title: Dataset Loading
+description: Understanding how to load datasets from different sources
+back-to-top-navigation: true
+toc: true
+toc-depth: 5
+---
+
+## Overview
+
+Datasets can be loaded in a number of different ways depending on the how it is saved (the extension of the file) and where it is stored.
+
+## Loading Datasets
+
+We use the `datasets` library to load datasets and a mix of `load_dataset` and `load_from_disk` to load them.
+
+You may recognize the similar named configs between `load_dataset` and the `datasets` section of the config file.
+
+```yaml
+datasets:
+  - path:
+    name:
+    data_files:
+    split:
+    revision:
+    trust_remote_code:
+```
+
+::: {.callout-tip}
+
+Do not feel overwhelmed by the number of options here. A lot of them are optional. In fact, the most common config to use would be `path` and sometimes `data_files`.
+
+:::
+
+This matches the API of [`datasets.load_dataset`](https://github.com/huggingface/datasets/blob/0b5998ac62f08e358f8dcc17ec6e2f2a5e9450b6/src/datasets/load.py#L1838-L1858), so if you're familiar with that, you will feel right at home.
+
+For HuggingFace's guide to load different dataset types, see [here](https://huggingface.co/docs/datasets/loading).
+
+For full details on the config, see [config-reference.qmd](config-reference.qmd).
+
+::: {.callout-note}
+
+You can set multiple datasets in the config file by more than one entry under `datasets`.
+
+```yaml
+datasets:
+  - path: /path/to/your/dataset
+  - path: /path/to/your/other/dataset
+```
+
+:::
+
+### Local dataset
+
+#### Files
+
+To load a JSON file, you would do something like this:
+
+```python
+from datasets import load_dataset
+
+dataset = load_dataset("json", data_files="data.json")
+```
+
+Which translates to the following config:
+
+```yaml
+datasets:
+  - path: data.json
+    ds_type: json
+```
+
+In the example above, it can be seen that we can just point the `path` to the file or directory along with the `ds_type` to load the dataset.
+
+This works for CSV, JSON, Parquet, and Arrow files.
+
+::: {.callout-tip}
+
+If `path` points to a file and `ds_type` is not specified, we will automatically infer the dataset type from the file extension, so you could omit `ds_type` if you'd like.
+
+:::
+
+#### Directory
+
+If you're loading a directory, you can point the `path` to the directory.
+
+Then, you have two options:
+
+##### Loading entire directory
+
+You do not need any additional configs.
+
+We will attempt to load in the following order:
+- datasets saved with `datasets.save_to_disk`
+- loading entire directory of files (such as with parquet/arrow files)
+
+```yaml
+datasets:
+  - path: /path/to/your/directory
+```
+
+##### Loading specific files in directory
+
+Provide `data_files` with a list of files to load.
+
+```yaml
+datasets:
+    # single file
+  - path: /path/to/your/directory
+    ds_type: csv
+    data_files: file1.csv
+
+    # multiple files
+  - path: /path/to/your/directory
+    ds_type: json
+    data_files:
+      - file1.jsonl
+      - file2.jsonl
+
+    # multiple files for parquet
+  - path: /path/to/your/directory
+    ds_type: parquet
+    data_files:
+      - file1.parquet
+      - file2.parquet
+
+```
+
+### HuggingFace Hub
+
+The method you use to load the dataset depends on how the dataset was created, whether a folder was uploaded directly or a HuggingFace Dataset was pushed.
+
+::: {.callout-note}
+
+If you're using a private dataset, you will need to enable the `hf_use_auth_token` flag in the root-level of the config file.
+
+:::
+
+#### Folder uploaded
+
+This would mean that the dataset is a single file or file(s) uploaded to the Hub.
+
+```yaml
+datasets:
+  - path: org/dataset-name
+    data_files:
+      - file1.jsonl
+      - file2.jsonl
+```
+
+#### HuggingFace Dataset
+
+This means that the dataset is created as a HuggingFace Dataset and pushed to the Hub via `datasets.push_to_hub`.
+
+```yaml
+datasets:
+  - path: org/dataset-name
+```
+
+::: {.callout-note}
+
+There are some other configs which may be required like `name`, `split`, `revision`, `trust_remote_code`, etc depending on the dataset.
+
+:::
+
+### Remote Filesystems
+
+Via the `storage_options` config under `load_dataset`, you can load datasets from remote filesystems like S3, GCS, Azure, and OCI.
+
+::: {.callout-warning}
+
+This is currently experimental. Please let us know if you run into any issues!
+
+:::
+
+The only difference between the providers is that you need to prepend the path with the respective protocols.
+
+```yaml
+datasets:
+    # Single file
+  - path: s3://bucket-name/path/to/your/file.jsonl
+
+    # Directory
+  - path: s3://bucket-name/path/to/your/directory
+```
+
+For directory, we load via `load_from_disk`.
+
+#### S3
+
+Prepend the path with `s3://`.
+
+The credentials are pulled in the following order:
+
+- `AWS_ACCESS_KEY_ID`, `AWS_SECRET_ACCESS_KEY`, and `AWS_SESSION_TOKEN` environment variables
+- from the `~/.aws/credentials` file
+- for nodes on EC2, the IAM metadata provider
+
+::: {.callout-note}
+
+We assume you have credentials setup and not using anonymous access. If you want to use anonymous access, let us know! We may have to open a config option for this.
+
+:::
+
+Other environment variables that can be set can be found in [boto3 docs](https://boto3.amazonaws.com/v1/documentation/api/latest/guide/configuration.html#using-environment-variables)
+
+#### GCS
+
+Prepend the path with `gs://` or `gcs://`.
+
+The credentials are loaded in the following order:
+
+- gcloud credentials
+- for nodes on GCP, the google metadata service
+- anonymous access
+
+#### Azure
+
+##### Gen 1
+
+Prepend the path with `adl://`.
+
+Ensure you have the following environment variables set:
+
+- `AZURE_STORAGE_TENANT_ID`
+- `AZURE_STORAGE_CLIENT_ID`
+- `AZURE_STORAGE_CLIENT_SECRET`
+
+##### Gen 2
+
+Prepend the path with `abfs://` or `az://`.
+
+Ensure you have the following environment variables set:
+
+- `AZURE_STORAGE_ACCOUNT_NAME`
+- `AZURE_STORAGE_ACCOUNT_KEY`
+
+Other environment variables that can be set can be found in [adlfs docs](https://github.com/fsspec/adlfs?tab=readme-ov-file#setting-credentials)
+
+#### OCI
+
+Prepend the path with `oci://`.
+
+It would attempt to read in the following order:
+
+- `OCIFS_IAM_TYPE`, `OCIFS_CONFIG_LOCATION`, and `OCIFS_CONFIG_PROFILE` environment variables
+- when on OCI resource, resource principal
+
+Other environment variables:
+
+- `OCI_REGION_METADATA`
+
+Please see the [ocifs docs](https://ocifs.readthedocs.io/en/latest/getting-connected.html#Using-Environment-Variables).
+
+### HTTPS
+
+The path should start with `https://`.
+
+```yaml
+datasets:
+  - path: https://path/to/your/dataset/file.jsonl
+```
+
+This must be publically accessible.
+
+## Next steps
+
+Now that you know how to load datasets, you can learn more on how to load your specific dataset format into your target output format [dataset formats docs](dataset-formats).

docs/dataset_preprocessing.qmd

@@ -6,7 +6,7 @@ description: How datasets are processed
 ## Overview
 
 Dataset pre-processing is the step where Axolotl takes each dataset you've configured alongside
-the [dataset format](docs/dataset-formats) and prompt strategies to:
+the [dataset format](dataset-formats) and prompt strategies to:
 
  - parse the dataset based on the *dataset format*
  - transform the dataset to how you would interact with the model based on the *prompt strategy*

docs/debugging.qmd

@@ -6,6 +6,10 @@ description: How to debug Axolotl
 
 This document provides some tips and tricks for debugging Axolotl.  It also provides an example configuration for debugging with VSCode.  A good debugging setup is essential to understanding how Axolotl code works behind the scenes.
 
+::: {.callout-tip}
+For training-specific debugging (loss spikes, NaN gradients, OOM errors, RL training stability), see [Training Stability & Debugging](training_stability.qmd).
+:::
+
 ## Table of Contents
 
 - [General Tips](#general-tips)
@@ -29,7 +33,7 @@ While debugging it's helpful to simplify your test scenario as much as possible.
 1. **Make sure you are using the latest version of axolotl**:  This project changes often and bugs get fixed fast.  Check your git branch and make sure you have pulled the latest changes from `main`.
 1. **Eliminate concurrency**: Restrict the number of processes to 1 for both training and data preprocessing:
     - Set `CUDA_VISIBLE_DEVICES` to a single GPU, ex: `export CUDA_VISIBLE_DEVICES=0`.
-    - Set `dataset_processes: 1` in your axolotl config or run the training command with `--dataset_processes=1`.
+    - Set `dataset_num_proc: 1` in your axolotl config or run the training command with `--dataset_num_proc=1`.
 2. **Use a small dataset**: Construct or use a small dataset from HF Hub. When using a small dataset, you will often have to make sure `sample_packing: False` and `eval_sample_packing: False` to avoid errors.  If you are in a pinch and don't have time to construct a small dataset but want to use from the HF Hub, you can shard the data (this will still tokenize the entire dataset, but will only use a fraction of the data for training.  For example, to shard the dataset into 20 pieces, add the following to your axolotl config):
 
     ```yaml
@@ -72,8 +76,10 @@ datasets:
 Make sure you have an [editable install](https://setuptools.pypa.io/en/latest/userguide/development_mode.html) of Axolotl, which ensures that changes you make to the code are reflected at runtime.  Run the following commands from the root of this project:
 
 ```bash
-pip3 install packaging
-pip3 install --no-build-isolation -e '.[flash-attn,deepspeed]'
+export UV_TORCH_BACKEND=cu128  # or cu130
+uv venv --no-project --relocatable
+source .venv/bin/activate
+uv pip install --no-build-isolation -e '.[deepspeed]' --group dev --group test
 ```
 
 #### Remote Hosts
@@ -85,7 +91,7 @@ If you developing on a remote host, you can easily use VSCode to debug remotely.
 
 The easiest way to get started is to modify the [.vscode/launch.json](../.vscode/launch.json) file in this project.  This is just an example configuration, so you may need to modify or copy it to suit your needs.
 
-For example, to mimic the command `cd devtools && CUDA_VISIBLE_DEVICES=0 accelerate launch -m axolotl.cli.train dev_chat_template.yml`, you would use the below configuration[^1].  Note that we add additional flags that override the axolotl config and incorporate the tips above (see the comments). We also set the working directory to `devtools` and set the `env` variable `HF_HOME` to a temporary folder that is later partially deleted.  This is because we want to delete the HF dataset cache before each run in order to ensure that the data preprocessing code is run from scratch.
+For example, to mimic the command `cd devtools && CUDA_VISIBLE_DEVICES=0 axolotl train dev_chat_template.yml`, you would use the below configuration[^1].  Note that we add additional flags that override the axolotl config and incorporate the tips above (see the comments). We also set the working directory to `devtools` and set the `env` variable `HF_HOME` to a temporary folder that is later partially deleted.  This is because we want to delete the HF dataset cache before each run in order to ensure that the data preprocessing code is run from scratch.
 
 ```json
 // .vscode/launch.json
@@ -101,7 +107,7 @@ For example, to mimic the command `cd devtools && CUDA_VISIBLE_DEVICES=0 acceler
                 "-m", "axolotl.cli.train", "dev_chat_template.yml",
                 // The flags below simplify debugging by overriding the axolotl config
                 // with the debugging tips above.  Modify as needed.
-                "--dataset_processes=1",      // limits data preprocessing to one process
+                "--dataset_num_proc=1",      // limits data preprocessing to one process
                 "--max_steps=1",              // limits training to just one step
                 "--batch_size=1",             // minimizes batch size
                 "--micro_batch_size=1",       // minimizes batch size
@@ -204,17 +210,18 @@ cd axolotl
 Next, run the desired docker image and mount the current directory. Below is a docker command you can run to do this:[^2]
 
 ```bash
-docker run --privileged --gpus '"all"' --shm-size 10g --rm -it --name axolotl --ipc=host --ulimit memlock=-1 --ulimit stack=67108864 --mount type=bind,src="${PWD}",target=/workspace/axolotl -v ${HOME}/.cache/huggingface:/root/.cache/huggingface axolotlai/axolotl:main-py3.10-cu118-2.0.1
+docker run --privileged --gpus '"all"' --shm-size 10g --rm -it --name axolotl --ipc=host --ulimit memlock=-1 --ulimit stack=67108864 --mount type=bind,src="${PWD}",target=/workspace/axolotl -v ${HOME}/.cache/huggingface:/root/.cache/huggingface axolotlai/axolotl-uv:main-latest
 ```
 
 >[!Tip]
 > To understand which containers are available, see the [Docker section of the README](../README.md#docker) and the [DockerHub repo](https://hub.docker.com/r/axolotlai/axolotl/tags).  For details of how the Docker containers are built, see axolotl's [Docker CI builds](../.github/workflows/main.yml).
 
-You will now be in the container.  Next, perform an editable install of Axolotl:
+You will now be in the container.  Next, install Axolotl with dev dependencies:
 
 ```bash
-pip3 install packaging
-pip3 install --no-build-isolation -e '.[flash-attn,deepspeed]'
+uv venv --no-project --relocatable
+source .venv/bin/activate
+uv pip install --no-build-isolation -e '.[deepspeed]' --group dev --group test
 ```
 
 ### Attach To Container
@@ -242,6 +249,6 @@ style="border-radius: 10px; display: block; margin: auto;" width="560" height="3
 </div>
 <br>
 
-[^1]: The config actually mimics the command `CUDA_VISIBLE_DEVICES=0 python -m accelerate.commands.launch -m axolotl.cli.train devtools/chat_template.yml`, but this is the same thing.
+[^1]: The VSCode config uses `accelerate.commands.launch` as the Python module entry point, which is what `axolotl train` invokes under the hood.
 
 [^2]: Many of the below flags are recommended best practices by Nvidia when using nvidia-container-toolkit.  You can read more about these flags [here](https://docs.nvidia.com/deeplearning/frameworks/user-guide/index.html).

docs/docker.qmd

@@ -6,19 +6,33 @@ format:
     toc-depth: 4
 ---
 
-This section describes the different Docker images that are released by AxolotlAI at [Docker Hub](https://hub.docker.com/u/axolotlai).
+This section describes the different Docker images that are released by AxolotlAI at
+[Docker Hub](https://hub.docker.com/u/axolotlai).
+
+::: {.callout-important}
+### Switch to the `-uv` images
+
+Each image below ships a **uv variant** that uses [uv](https://docs.astral.sh/uv/) with a relocatable venv
+(`/workspace/axolotl-venv`) instead of Miniconda + pip. Append `-uv` to the image name
+(e.g. `axolotlai/axolotl-uv`, `axolotlai/axolotl-base-uv`, `axolotlai/axolotl-cloud-uv`). Tags follow the
+same format as their non-uv counterparts.
+
+**We recommend switching to the `-uv` images early.** In the near future we will publish the uv-based
+build to the non-uv tags as well. The non-uv names will continue to work, but they will start serving
+the uv image.
+:::
 
 ## Base
 
-The base image is the most minimal image that can install Axolotl. It is based on the `nvidia/cuda` image. It includes python, torch, git, git-lfs, awscli, pydantic, and more.
+The base image is the most minimal image that can install Axolotl. It is based on the `nvidia/cuda` image.
+It includes python, torch, git, git-lfs, awscli, pydantic, and more.
 
 #### Image
 
-```
-axolotlai/axolotl-base
-```
-
-Link: [Docker Hub](https://hub.docker.com/r/axolotlai/axolotl-base)
+| Variant | Image | Docker Hub |
+|---------|-------|------------|
+| pip | `axolotlai/axolotl-base` | [Link](https://hub.docker.com/r/axolotlai/axolotl-base) |
+| uv | `axolotlai/axolotl-base-uv` | [Link](https://hub.docker.com/r/axolotlai/axolotl-base-uv) |
 
 #### Tags format
 
@@ -28,9 +42,10 @@ main-base-py{python_version}-cu{cuda_version}-{pytorch_version}
 
 Tags examples:
 
-- `main-base-py3.11-cu124-2.6.0`
-- `main-base-py3.11-cu124-2.5.1`
-- `main-base-py3.11-cu124-2.4.1`
+- `main-base-py3.11-cu128-2.9.1`
+- `main-base-py3.12-cu128-2.10.0`
+- `main-base-py3.12-cu130-2.9.1`
+- `main-base-py3.12-cu130-2.10.0`
 
 ## Main
 
@@ -38,11 +53,10 @@ The main image is the image that is used to run Axolotl. It is based on the `axo
 
 #### Image
 
-```
-axolotlai/axolotl
-```
-
-Link: [Docker Hub](https://hub.docker.com/r/axolotlai/axolotl)
+| Variant | Image | Docker Hub |
+|---------|-------|------------|
+| pip | `axolotlai/axolotl` | [Link](https://hub.docker.com/r/axolotlai/axolotl) |
+| uv | `axolotlai/axolotl-uv` | [Link](https://hub.docker.com/r/axolotlai/axolotl-uv) |
 
 #### Tags format {#sec-main-tags}
 
@@ -50,7 +64,7 @@ Link: [Docker Hub](https://hub.docker.com/r/axolotlai/axolotl)
 # on push to main
 main-py{python_version}-cu{cuda_version}-{pytorch_version}
 
-# latest main (currently torch 2.5.1, python 3.11, cuda 12.4)
+# latest main (currently torch 2.9.1, python 3.11, cuda 12.8)
 main-latest
 
 # nightly build
@@ -68,14 +82,13 @@ There may be some extra tags appended to the image, like `-vllm` which installs
 
 Tags examples:
 
-- `main-py3.11-cu124-2.6.0`
-- `main-py3.11-cu124-2.5.1`
-- `main-py3.11-cu124-2.4.1`
+- `main-py3.11-cu128-2.9.1`
+- `main-py3.12-cu128-2.10.0`
+- `main-py3.12-cu130-2.9.1`
+- `main-py3.12-cu130-2.10.0`
 - `main-latest`
-- `main-20250303-py3.11-cu124-2.6.0`
-- `main-20250303-py3.11-cu124-2.5.1`
-- `main-20250303-py3.11-cu124-2.4.1`
-- `0.7.1`
+- `main-20260315-py3.11-cu128-2.9.1`
+- `0.16.1`
 
 ## Cloud
 
@@ -89,11 +102,10 @@ Jupyter lab is run by default. Set `JUPYTER_DISABLE=1` in the environment variab
 
 #### Image
 
-```
-axolotlai/axolotl-cloud
-```
-
-Link: [Docker Hub](https://hub.docker.com/r/axolotlai/axolotl-cloud)
+| Variant | Image | Docker Hub |
+|---------|-------|------------|
+| pip | `axolotlai/axolotl-cloud` | [Link](https://hub.docker.com/r/axolotlai/axolotl-cloud) |
+| uv | `axolotlai/axolotl-cloud-uv` | [Link](https://hub.docker.com/r/axolotlai/axolotl-cloud-uv) |
 
 #### Tags format
 
@@ -103,8 +115,7 @@ This uses the same tags as the [`main` image](#sec-main-tags).
 
 - `JUPYTER_DISABLE`: Disable Jupyter lab.
 - `JUPYTER_PASSWORD`: Set a password for the Jupyter lab.
-- `PUBLIC_KEY`: Add a public key for the SSH service.
-- `SSH_KEY`: Add a private key for the SSH service.
+- `PUBLIC_KEY` / `SSH_KEY`: Add a public key for the SSH service.
 
 #### Volume mounts
 

docs/ebft.qmd

@@ -0,0 +1,556 @@
+---
+title: "EBFT Training"
+description: "Energy-Based Fine-Tuning uses feature-matching rewards from internal representations to train language models without external reward functions."
+order: 9
+back-to-top-navigation: true
+toc: true
+toc-expand: 2
+toc-depth: 4
+---
+
+## Overview
+
+Energy-Based Fine-Tuning (EBFT) is a training method that optimizes language models by matching the **internal feature representations** of generated text to those of ground-truth completions. Instead of relying on external reward models or hand-crafted reward functions, EBFT extracts hidden states from intermediate layers of a frozen copy of the model and uses cosine similarity between generated and reference features as the reward signal.
+
+Paper: ["Matching Features, Not Tokens: Energy-Based Fine-Tuning of Language Models"](https://arxiv.org/abs/2603.12248) (Jelassi et al., 2026)
+
+### How EBFT Differs from Other RL Methods
+
+| Method | Reward Signal | Requires | Best For |
+|--------|--------------|----------|----------|
+| **GRPO** | External reward function(s) | Custom reward code or reward model | Tasks with verifiable answers (math, code) |
+| **DPO** | Preference pairs (chosen vs rejected) | Paired preference data | Alignment with human preferences |
+| **EBFT** | Feature similarity to ground truth | Ground-truth completions | Any task with reference outputs |
+
+EBFT's key advantage is that it needs only ground-truth completions -- no reward engineering, no preference annotation, and no reward model training. The model's own internal representations serve as the reward signal. This makes it particularly effective for:
+
+- Code generation (match features of known-good solutions)
+- Instruction following with reference outputs
+- Continual pretraining on unstructured text (strided mode)
+- Multi-turn dialogue with reference conversations
+
+### Reward Formulation
+
+The EBFT reward for each generated completion is:
+
+```
+reward = alignment_coef * cosine_similarity(gen_features, gt_features)
+       - diversity_coef * mean_pairwise_similarity(gen_features)
+```
+
+- **Alignment**: How closely the generated output's internal representations match the ground truth. Higher is better.
+- **Diversity**: Penalizes generated samples that are too similar to each other (prevents mode collapse). Lower is better.
+- **CFM loss** (Cross-Feature Matching): Tracks `||mean(gen_features) - gt_features||^2` as a diagnostic. This is the quantity that EBFT ultimately minimizes.
+
+## Modes
+
+EBFT supports three operational modes, each suited to different use cases.
+
+### Structured Mode (Sync)
+
+Uses vLLM on a separate GPU for generation, with sequential generate-score-train steps. This is the simplest mode and recommended for getting started.
+
+```
+GPU 0: vLLM Server (generates completions, receives weight syncs)
+GPU 1: Trainer (feature extraction, reward computation, GRPO training)
+```
+
+**When to use**: Standard instruction-following or QA datasets where you have prompt/completion pairs. Requires 2 GPUs.
+
+### Structured Mode (Async)
+
+Same architecture as sync, but overlaps generation of the next batch with training on the current batch. Faster throughput at the cost of slightly stale weights during generation.
+
+**When to use**: Same data as sync mode, but when you want faster training and can tolerate weight staleness (controlled by `vllm_sync_interval`).
+
+### Strided Mode
+
+Runs entirely on a single GPU with no vLLM dependency. Places anchor points throughout a document and generates short rollouts at each anchor using block-parallel attention patterns.
+
+```
+Single GPU: Base model + LoRA adapter
+  - Strided block-parallel generation (flex_attention)
+  - Feature extraction via disable_adapter()
+  - No vLLM needed
+```
+
+**When to use**: Unstructured text data (raw code, prose, documents) where there is no natural prompt/completion split. Also works with structured data that includes prompt boundaries. Requires only 1 GPU.
+
+## Quick Start
+
+### Structured Mode
+
+This minimal example fine-tunes Qwen2-0.5B on code data using EBFT with vLLM generation.
+
+**Step 1**: Create a config file `ebft_quickstart.yaml`:
+
+```yaml
+base_model: Qwen/Qwen2-0.5B-Instruct
+
+rl: ebft
+
+ebft:
+  feature_layers: [0.25, 0.5, 0.75]
+  embed_method: last_token
+  alignment_coef: 1.0
+  diversity_coef: 1.0
+
+trl:
+  num_generations: 4
+  max_completion_length: 256
+  temperature: 0.7
+  use_vllm: true
+  vllm_server_host: 0.0.0.0
+  vllm_server_port: 8000
+  vllm_lora_sync: true
+  vllm_sync_interval: 3
+  use_data_producer: true
+  async_prefetch: false
+  scale_rewards: true
+  loss_type: grpo
+
+vllm:
+  gpu_memory_utilization: 0.5
+  max_model_len: 1024
+
+datasets:
+  - path: nvidia/OpenCodeInstruct
+    type: ebft_opencode.transform
+    split: train[:500]
+
+# Standard training settings (see getting-started.qmd for details)
+adapter: lora
+lora_r: 16
+lora_alpha: 32
+lora_target_linear: true
+sequence_len: 1024
+micro_batch_size: 2
+gradient_accumulation_steps: 4
+max_steps: 20
+learning_rate: 5.0e-6
+bf16: auto
+attn_implementation: flash_attention_2
+gradient_checkpointing: true
+output_dir: ./outputs/ebft-quickstart
+```
+
+**Step 2**: Start vLLM on GPU 0:
+
+```bash
+CUDA_VISIBLE_DEVICES=0 axolotl vllm-serve ebft_quickstart.yaml
+```
+
+**Step 3**: Wait approximately 30 seconds for vLLM to initialize, then start training on GPU 1:
+
+```bash
+CUDA_VISIBLE_DEVICES=1 axolotl train ebft_quickstart.yaml
+```
+
+::: {.callout-important}
+The `micro_batch_size` must be divisible by `num_generations`. For example, with `num_generations: 4`, valid values are 4, 8, 12, etc.
+:::
+
+### Dataset Format
+
+Structured mode datasets must produce two fields after the transform:
+
+- `prompt`: Either a string or a list of chat messages (`[{"role": "user", "content": "..."}]`)
+- `ground_truth`: A string containing the reference completion
+
+Example raw dataset row:
+
+```json
+{
+  "input": "Write a function to compute fibonacci numbers.",
+  "output": "def fibonacci(n):\n    if n <= 1:\n        return n\n    return fibonacci(n-1) + fibonacci(n-2)"
+}
+```
+
+The `ebft_opencode.transform` converts this to the required `{prompt, ground_truth}` format automatically.
+
+## Feature Extraction
+
+EBFT extracts hidden states from intermediate transformer layers and pools them into per-sequence embeddings. These embeddings are compared between generated and ground-truth completions to compute rewards.
+
+### Feature Layers
+
+The `feature_layers` parameter specifies which layers to extract, as fractions of total model depth:
+
+```yaml
+ebft:
+  feature_layers: [0.25, 0.5, 0.75]  # Quarter, middle, three-quarter depth
+```
+
+For a 32-layer model, this extracts layers 8, 16, and 24. The hidden states from all selected layers are concatenated along the feature dimension, producing embeddings of size `num_layers * hidden_dim`.
+
+::: {.callout-tip}
+Using multiple layers captures both low-level syntactic features (early layers) and high-level semantic features (later layers). The default `[0.25, 0.5, 0.75]` works well across model sizes.
+:::
+
+### Embed Methods
+
+The `embed_method` controls how per-token hidden states are pooled into a single vector per sequence:
+
+| Method | Description | Output Shape | Notes |
+|--------|-------------|-------------|-------|
+| `last_token` | Hidden state at the last non-padding token | `(B, D)` | Default. Good for autoregressive models where the last token summarizes the sequence. |
+| `mean_pooling` | Mean of all non-padding token states | `(B, D)` | Considers the entire sequence equally. |
+| `completion_mean` | Mean over completion tokens only (excludes prompt) | `(B, D)` | Focuses reward signal on generated content. Requires prompt length information. |
+| `concat` | Concatenation of states at 25%, 50%, 75% positions | `(B, 3*D)` | Captures positional structure. Higher dimensional. |
+
+```yaml
+ebft:
+  embed_method: completion_mean  # Focus on completion features
+```
+
+### SVD Whitening
+
+Whitening decorrelates the feature dimensions so that no single direction dominates the feature-matching loss. This is computed via SVD on the generated embeddings, with the same transform applied to the ground-truth embeddings.
+
+```yaml
+ebft:
+  use_whitening: true
+```
+
+When whitening is enabled, the reward computation applies a whitening matrix `W = U @ diag(1/S) @ U^T` derived from the SVD of generated embeddings. This ensures all feature dimensions contribute equally to the alignment reward.
+
+::: {.callout-note}
+Singular values scale with `sqrt(batch_size)`, so reward magnitudes are batch-size dependent. This is acceptable because the number of samples per prompt (`n_samples_per_prompt` or `num_generations`) is fixed during training.
+:::
+
+### Alignment and Diversity Coefficients
+
+The two reward components are weighted by coefficients:
+
+```yaml
+ebft:
+  alignment_coef: 1.0   # Weight for cosine similarity with ground truth
+  diversity_coef: 1.0   # Weight for pairwise similarity penalty
+```
+
+Both values are scaled by 2 internally (per paper equation 7). The final reward per sample is:
+
+```
+reward_j = 2 * alignment_coef * cos(gen_j, gt)
+         - 2 * diversity_coef * (1/(n-1)) * sum_{j' != j} dot(gen_j, gen_j')
+```
+
+Setting `diversity_coef: 0.0` disables the diversity penalty entirely, which may be appropriate when `num_generations` is small (e.g., 2).
+
+## Strided Mode
+
+Strided mode is designed for training on unstructured text data where there is no natural prompt/completion boundary. Instead of generating full completions with vLLM, it places **anchor points** at regular intervals throughout each document and generates short rollouts at each anchor using block-parallel attention.
+
+### How Block-Parallel Generation Works
+
+Given a document of length `S` tokens:
+
+1. **Anchor placement**: Starting at position `anchor_offset`, place anchors every `stride` tokens. Each anchor defines a block.
+2. **Context window**: Each block sees `context_length` tokens of preceding context from the original document.
+3. **Generation**: At each anchor, generate `generate_max_len` tokens autoregressively, conditioned only on the context window.
+4. **Parallelism**: All blocks are processed in a single forward pass using a specialized attention mask that prevents information leakage between blocks.
+
+```
+Document:   [tok0, tok1, ..., tok_S]
+                    |         |         |
+                 anchor_0   anchor_1  anchor_2
+                    |         |         |
+             [ctx][gen]  [ctx][gen]  [ctx][gen]
+```
+
+The attention mask ensures:
+
+- Prompt tokens use standard causal attention
+- Each generated block attends to its own context window and its own preceding generated tokens
+- Blocks do not attend to each other's generated tokens
+
+When `flex_attention` is available (PyTorch >= 2.5), the mask is compiled into efficient fused kernels. Otherwise, a dense 4D attention mask is used as a fallback.
+
+### Strided Mode Configuration
+
+```yaml
+base_model: meta-llama/Llama-3.2-1B
+rl: ebft
+
+ebft:
+  mode: strided
+  stride: 8                    # Tokens between anchor points
+  context_length: 8            # Context window per block
+  generate_max_len: 8          # Tokens to generate per block
+  n_samples_per_prompt: 4      # Independent rollouts per document
+  temperature: 0.6
+  feature_layers: [0.25, 0.5, 0.75]
+  embed_method: last_token
+  use_whitening: true
+  alignment_coef: 1.0
+  diversity_coef: 1.0
+  rl_coef: 1.0                # RL policy gradient loss weight
+  ce_coef: 0.03               # Cross-entropy loss on GT tokens
+  advantage_estimator: rloo    # rloo, group_norm, or reinforce
+  min_completion_prefix: 8     # Skip anchors in prompt region
+
+datasets:
+  - path: nvidia/OpenCodeInstruct
+    type: ebft_strided_structured.transform
+    split: train[:1%]
+
+sequence_len: 2048
+micro_batch_size: 1
+gradient_accumulation_steps: 2
+
+adapter: lora
+lora_r: 16
+lora_alpha: 32
+lora_target_linear: true
+
+bf16: auto
+attn_implementation: flex_attention
+gradient_checkpointing: true
+gradient_checkpointing_kwargs:
+  use_reentrant: true          # Required with flex_attention
+```
+
+Run with a single command (no vLLM needed):
+
+```bash
+CUDA_VISIBLE_DEVICES=0 axolotl train config.yaml
+```
+
+### Advantage Estimators
+
+Strided mode supports three advantage estimation methods:
+
+| Estimator | Formula | Requirements |
+|-----------|---------|-------------|
+| `rloo` | Leave-one-out baseline: `reward_j - mean(rewards_{-j})` | `n_samples_per_prompt >= 2` |
+| `group_norm` | Group normalization: `(reward_j - mean) / std` | `n_samples_per_prompt >= 2` |
+| `reinforce` | Raw reward as advantage (no baseline) | Works with `n_samples_per_prompt = 1` |
+
+::: {.callout-warning}
+When `n_samples_per_prompt: 1`, the trainer automatically falls back to `reinforce` and disables the diversity penalty (which requires multiple samples).
+:::
+
+### Strided Mode Constraints
+
+- **`flex_attention: true`** is strongly recommended. Without it, dense 4D masks consume significantly more memory.
+- **`torch_compile: true`** must NOT be set. `flex_attention` compiles its own kernels internally; adding `torch_compile` causes conflicts and OOM.
+- **Gradient checkpointing** must use `use_reentrant: true`. Non-reentrant checkpointing causes `CheckpointError` with `flex_attention` block masks.
+- **`activation_offloading`** is incompatible with `flex_attention`.
+
+### Cross-Entropy Loss
+
+Strided mode supports an optional cross-entropy loss term on ground-truth tokens. This acts as a regularizer to prevent the model from drifting too far from the original distribution:
+
+```yaml
+ebft:
+  ce_coef: 0.03    # Small CE coefficient
+  rl_coef: 1.0     # RL loss coefficient
+```
+
+The total loss is `rl_coef * rl_loss + ce_coef * ce_loss`. For structured mode, `ce_coef` is typically `0.0` since vLLM generation provides sufficient learning signal.
+
+## Dataset Formats
+
+EBFT provides several built-in dataset transforms in `src/axolotl/prompt_strategies/ebft/`.
+
+### Built-In Transforms
+
+| Transform | Input Format | Output Fields | Use Case |
+|-----------|-------------|---------------|----------|
+| `ebft_opencode.transform` | `{input, output}` | `{prompt, ground_truth}` | OpenCodeInstruct, structured QA |
+| `ebft_strided_structured.transform` | `{input, output}` | `{input_ids, labels, prompt_length}` | Strided mode with structured data |
+| `ebft_strided_chat.transform` | `{messages: [...]}` | `{input_ids, labels, prompt_length}` | Strided mode with chat data |
+| `ebft_chat_multiturn.transform` | `{messages: [...]}` | `{prompt, ground_truth, remaining_turns}` | Multi-turn: first-turn target |
+| `ebft_chat_multiturn.transform_last_turn` | `{messages: [...]}` | `{prompt, ground_truth}` | Multi-turn: last-turn target |
+| `ebft_chat_multiturn.transform_all_turns` | `{messages: [...]}` | `{prompt[], ground_truth[]}` | Multi-turn: one example per turn |
+| `ebft_reasoning.transform` | `{messages: [...]}` (with `<think>`) | `{prompt, ground_truth}` | Reasoning/thinking datasets |
+
+### Structured Mode Datasets
+
+For structured (sync/async) mode, the transform must produce `prompt` and `ground_truth` fields:
+
+```yaml
+datasets:
+  - path: nvidia/OpenCodeInstruct
+    type: ebft_opencode.transform
+    split: train[:500]
+```
+
+### Multi-Turn Datasets
+
+Multi-turn transforms extract conversation data for sequential rollout. The `transform` variant targets the first assistant turn, while `transform_last_turn` targets the final turn:
+
+```yaml
+datasets:
+  - path: your/multiturn-dataset
+    type: ebft_chat_multiturn.transform
+```
+
+When `remaining_turns` is present in the dataset output, the trainer performs sequential rollouts: it generates the first assistant turn with vLLM, then continues generating subsequent turns by building up the conversation history.
+
+### Strided Mode Datasets
+
+Strided transforms tokenize the full document and produce `input_ids`, `labels`, and `prompt_length`:
+
+```yaml
+datasets:
+  - path: nvidia/OpenCodeInstruct
+    type: ebft_strided_structured.transform
+    split: train[:1%]
+```
+
+### Custom Transforms
+
+To use your own dataset format, write a transform function:
+
+```python
+def transform(cfg, **kwargs):
+    def transform_fn(example, tokenizer=None):
+        return {
+            "prompt": [{"role": "user", "content": example["question"]}],
+            "ground_truth": example["answer"],
+        }
+    return transform_fn, {"remove_columns": "__all__"}
+```
+
+The `"__all__"` sentinel removes all original dataset columns after the mapping step. Reference this transform in your config:
+
+```yaml
+datasets:
+  - path: your/dataset
+    type: your_module.transform
+```
+
+## Configuration Reference
+
+### Common Parameters (All Modes)
+
+These parameters are set under the `ebft:` key in the YAML config.
+
+| Parameter | Type | Default | Description |
+|-----------|------|---------|-------------|
+| `mode` | `"structured"` or `"strided"` | `"structured"` | EBFT operating mode |
+| `feature_layers` | `list[float]` | `[0.25, 0.5, 0.75]` | Fractional layer depths for feature extraction |
+| `embed_method` | `string` | `"last_token"` | Pooling method: `last_token`, `mean_pooling`, `completion_mean`, or `concat` |
+| `use_whitening` | `bool` | `false` | Apply SVD whitening to feature embeddings before reward computation |
+| `alignment_coef` | `float` | `1.0` | Weight for alignment reward (cosine similarity with ground truth) |
+| `diversity_coef` | `float` | `1.0` | Weight for diversity penalty (pairwise dot product between samples) |
+| `ce_coef` | `float` | `0.0` | Cross-entropy loss coefficient on ground-truth tokens |
+| `adaptive_max_tokens` | `bool` | `true` | Dynamically set vLLM `max_tokens` based on ground-truth length (structured mode) |
+| `gt_length_multiplier` | `float` | `1.5` | Multiplier for ground-truth token count when computing adaptive max tokens (min 0.1) |
+
+### Strided Mode Parameters
+
+These additional parameters apply only when `mode: strided`.
+
+| Parameter | Type | Default | Description |
+|-----------|------|---------|-------------|
+| `stride` | `int` | `8` | Number of tokens between anchor points (must be >= 1) |
+| `context_length` | `int` | `8` | Context window size for each generated block (must be >= 1) |
+| `generate_max_len` | `int` | `8` | Number of tokens to generate per block (must be >= 1) |
+| `n_samples_per_prompt` | `int` | `4` | Number of independent rollouts per document (must be >= 1) |
+| `temperature` | `float` | `0.6` | Sampling temperature for strided generation |
+| `top_p` | `float` | `1.0` | Top-p nucleus sampling threshold |
+| `rl_coef` | `float` | `1.0` | RL policy gradient loss coefficient |
+| `advantage_estimator` | `string` | `"rloo"` | Advantage estimation method: `rloo`, `group_norm`, or `reinforce` |
+| `min_completion_prefix` | `int` | `0` | Minimum tokens into the completion span before placing anchors |
+
+### Structured Mode TRL Parameters
+
+These are set under the `trl:` key and control the GRPO training loop.
+
+| Parameter | Type | Default | Description |
+|-----------|------|---------|-------------|
+| `num_generations` | `int` | -- | Number of completions generated per prompt |
+| `max_completion_length` | `int` | -- | Maximum tokens per generated completion |
+| `temperature` | `float` | `0.7` | Sampling temperature for vLLM generation |
+| `use_vllm` | `bool` | -- | Enable vLLM generation backend |
+| `vllm_lora_sync` | `bool` | `false` | Sync LoRA adapters via filesystem (recommended) |
+| `vllm_sync_interval` | `int` | `1` | Steps between weight syncs to vLLM |
+| `use_data_producer` | `bool` | -- | Required for sync mode with LoRA sync |
+| `async_prefetch` | `bool` | `false` | Enable async generation (overlaps with training) |
+| `streaming_partial_batch` | `bool` | `false` | Score groups incrementally (async mode) |
+| `skip_zero_advantage_batches` | `bool` | `false` | Skip micro-batches where all advantages are zero |
+| `scale_rewards` | `bool` | -- | Normalize rewards within each prompt group |
+| `loss_type` | `string` | `"grpo"` | Loss type for policy optimization |
+| `epsilon` | `float` | `0.2` | Clipping parameter for importance sampling |
+
+### Stop Tokens
+
+vLLM needs explicit stop token IDs for generation. Common configurations:
+
+```yaml
+trl:
+  generation_kwargs:
+    stop_token_ids: [151645, 151643]   # Qwen: <|im_end|>, <|endoftext|>
+```
+
+### Multi-Turn Chat Settings
+
+For multi-turn conversations with Qwen3.5, disable thinking mode to prevent `<think>` tags in completions:
+
+```yaml
+trl:
+  chat_template_kwargs:
+    enable_thinking: false
+```
+
+## Monitoring
+
+### Key Metrics
+
+EBFT logs several custom metrics to wandb and the training console. Here is what to watch for:
+
+| Metric | Healthy Range | Interpretation |
+|--------|--------------|----------------|
+| `ebft/alignment` | 0.3 -- 0.9, trending upward | Cosine similarity between generated and ground-truth features. Higher means the model is learning to produce representations that match the reference. |
+| `ebft/diversity` | 0.01 -- 0.1 | Mean pairwise similarity between different generations for the same prompt. Values above 1.0 indicate mode collapse. |
+| `ebft/cfm_loss` | Below 10, trending downward | Cross-Feature Matching loss. This is the core quantity being minimized. Consistently above 100 indicates instability. |
+| `ebft/reward` | Trending upward (may start negative) | Combined reward signal. If stuck at -1.0, the diversity penalty is dominating alignment. |
+| `grad_norm` | 0.1 -- 3.0 | Gradient magnitude. Values of 0.0 indicate zero-advantage skip (normal). Values above 10 suggest instability. |
+| `entropy` | 0.05 -- 0.5 | Policy entropy. Values below 0.01 suggest mode collapse. |
+| `IS ratio min` | Above 0.1 | Importance sampling ratio minimum. Near-zero values mean the policy is too far off-policy; increase `vllm_sync_interval`. |
+
+### Console Log Example
+
+During training, you will see periodic EBFT reward logs:
+
+```
+ebft reward | align +0.412 ^ | divers +0.023 v | cfm 4.231 v | reward +0.389 ^
+```
+
+The arrows indicate the desired direction: alignment and reward should trend upward, while diversity and CFM loss should trend downward.
+
+### Troubleshooting
+
+| Symptom | Likely Cause | Fix |
+|---------|-------------|-----|
+| `alignment` stays below 0.1 | Feature layers not capturing useful information | Try different `feature_layers` or `embed_method` |
+| `diversity` exceeds 1.0 | Mode collapse -- generations are too similar | Increase `diversity_coef` or `temperature` |
+| `reward` stuck at -1.0 | Diversity penalty dominates alignment | Reduce `diversity_coef` or increase `alignment_coef` |
+| `grad_norm` consistently 0.0 | All micro-batches have zero advantage | Increase `num_generations` or check data quality |
+| `CheckpointError` in strided mode | Incompatible gradient checkpointing settings | Set `use_reentrant: true` in `gradient_checkpointing_kwargs` |
+| OOM during training | Logits tensor too large | Reduce `sequence_len` or `micro_batch_size`; strided mode uses chunked lm_head to mitigate this |
+| vLLM 500 errors | `truncate_prompt_tokens` not supported | Ensure you are using `axolotl vllm-serve` (not `trl vllm-serve`) |
+
+### Feature Network Memory
+
+In PEFT (LoRA) mode, the feature network shares base weights with the actor model by using the `disable_adapter()` context manager. This saves an entire model copy in VRAM (approximately 1--16 GB depending on model size). For non-PEFT training, a separate frozen deepcopy is created.
+
+::: {.callout-note}
+The `disable_adapter()` approach relies on an invariant: `merge_adapter()` is never called on the base weights. All weight sync paths (LoRA sync, HTTP, NCCL) compute merged weights as new tensors or save the adapter to the filesystem, leaving base weights unmodified.
+:::
+
+## Examples
+
+Complete example configurations are available in `examples/ebft/`:
+
+| Config | Model | Mode | Description |
+|--------|-------|------|-------------|
+| `llama-1b-ebft-strided-structured.yaml` | Llama 3.2 1B | Strided | Single-GPU strided training on code data |
+| `qwen3-4b-ebft-structured.yaml` | Qwen3 4B | Structured (sync) | Two-GPU structured training |
+| `qwen3-4b-ebft-structured-async.yaml` | Qwen3 4B | Structured (async) | Two-GPU async training with prefetch |
+| `qwen3-8b-ebft-structured.yaml` | Qwen3 8B | Structured (sync) | Two-GPU structured training for larger model |
+| `qwen35-4b-ebft-structured.yaml` | Qwen3.5 4B | Structured (sync) | Two-GPU with Qwen3.5 |
+| `qwen35-4b-ebft-structured-async.yaml` | Qwen3.5 4B | Structured (async) | Two-GPU async with Qwen3.5 |
+| `qwen35-9b-ebft-structured.yaml` | Qwen3.5 9B | Structured (sync) | Two-GPU structured for 9B model |

docs/expert_quantization.qmd

@@ -0,0 +1,67 @@
+---
+title: "MoE Expert Quantization"
+description: "Reduce VRAM usage when training MoE model adapters by quantizing expert weights on load"
+---
+
+Transformers v5 changed MoE expert layers from `nn.Linear` to fused `nn.Parameter` (3D+ tensors).
+This means `bitsandbytes` can no longer quantize them during model loading, resulting in all expert
+weights being loaded in full bf16 precision and causing massive VRAM usage.
+
+`quantize_moe_experts` solves this by quantizing expert weights during model loading.
+It intercepts the weight loading process, quantizes each expert tensor on the fly, and
+immediately frees the original bf16 tensor from VRAM. This dramatically reduces peak memory.
+For example, GLM-4.7-Flash QLoRA drops from ~127GiB to ~23GiB reserved memory.
+
+## Usage
+
+Enable expert quantization in your Axolotl config:
+
+```yaml
+quantize_moe_experts: true
+```
+
+This works with both 4-bit (QLoRA) and 8-bit (LoRA) quantization.
+
+### Expert LoRA targeting
+
+You can optionally apply LoRA adapters directly to expert weights using `lora_target_parameters`:
+
+```yaml
+lora_target_parameters:
+  - mlp.experts.gate_up_proj
+  - mlp.experts.down_proj
+  # - mlp.gate.weight  # router
+```
+
+::: {.callout-note}
+`lora_dropout` must be `0` when using `lora_target_parameters`.
+:::
+
+## Requirements
+
+- Requires (`adapter: lora` and `load_in_8bit: true`) or (`adapter: qlora` and `load_in_4bit: true`)
+- CUDA GPUs only (not tested with ROCm or other backends)
+- FSDP2 compatible for distributed training
+
+## Limitations
+
+- `lora_target_linear` is not compatible with `quantize_moe_experts`. See [Expert LoRA targeting](#expert-lora-targeting) instead.
+- `cpu_ram_efficient_loading` hangs / takes long time with FSDP2 + QLoRA.
+- Total model parameter count may display incorrectly (trainable param count is correct).
+- FSDP LoRA (8-bit) may have a large initial VRAM spike at the first 1-2 steps, which then drops. QLoRA does not exhibit this.
+- FSDP2 may use more VRAM per GPU than single GPU training due to not all layers being properly sharded across ranks.
+- Model loading takes longer due to on-demand quantization, even on consecutive runs.
+- DeepSpeed has not been tested.
+
+## Implementation details
+
+The quantization is applied by patching transformers to intercept weight loading.
+When a 3D+ CUDA tensor with "expert" in its name is detected:
+
+- **4-bit mode:** Uses bitsandbytes NF4 parametrization (configurable via `bnb_4bit_quant_type`).
+- **8-bit mode:** Uses a custom row-wise int8 parametrization with bitsandbytes dequantization.
+
+The original bf16 tensor is freed immediately after quantization. Multiple sub-patches are applied to
+transformers, PEFT and accelerate FSDP2 to support these parametrized expert modules.
+
+For full implementation details, see [PR #3439](https://github.com/axolotl-ai-cloud/axolotl/pull/3439).

docs/faq.qmd

@@ -9,11 +9,11 @@ description: Frequently asked questions
 
 > A: Usually an issue with the GPUs communicating with each other. See the [NCCL doc](nccl.qmd)
 
-**Q: Exitcode -9**
+**Q: exitcode: -9**
 
 > A: This usually happens when you run out of system RAM.
 
-**Q: Exitcode -7 while using deepspeed**
+**Q: exitcode: -7 while using deepspeed**
 
 > A: Try upgrading deepspeed w: `pip install -U deepspeed`
 
@@ -27,6 +27,50 @@ description: Frequently asked questions
 
 > A: This is usually an issue with the GPU. This can be resolved through setting the os environment variable `CUDA_VISIBLE_DEVICES=0`. If you are on runpod, this is usually a pod issue. Starting a new pod should take care of it.
 
+**Q: Received mismatch error on merge adapters / loading adapters between torch.Size of checkpoint and model.**
+
+> A: This is likely due to vocab size mismatch. By default, Axolotl expands the model's embeddings if the tokenizer has more tokens than the model. Please use the `axolotl merge-lora` command to merge the adapters instead of using your own scripts.
+
+> On the other hand, if the model has more tokens than the tokenizer, Axolotl does not shrink the model's embeddings unless `shrink_embeddings: true` is set in the config.
+
+**Q: How to call Axolotl via custom python scripts?**
+
+> A: Since Axolotl is just Python, please see `src/axolotl/cli/main.py` on how each command is called.
+
+**Q: How to know the value to use for `fsdp_transformer_layer_cls_to_wrap`?**
+
+> A: This is the class name of the transformer layer to wrap with FSDP. For example, for `LlamaForCausalLM`, the value is `LlamaDecoderLayer`. To find this for a specific model, check the model's `PreTrainedModel` definition and look for `_no_split_modules` variable in the `modeling_<model_name>.py` file within `transformers` library.
+
+**Q: ValueError: Asking to pad but the tokenizer does not have a padding token. Please select a token to use as pad_token**
+
+> A: This is because the tokenizer does not have a padding token. Please add a padding token to the tokenizer via:
+
+> ```yaml
+> special_tokens:
+>   # str. If you're not sure, set to same as `eos_token`.
+>   pad_token: "..."
+> ```
+
+**Q: `IterableDataset error` or `KeyError: 'input_ids'` when using `preprocess` CLI**
+
+> A: This is because you may be using `preprocess` CLI with `pretraining_dataset:` or `skip_prepare_dataset: true` respectively. Please use `axolotl train` CLI directly instead as these datasets are prepared on demand.
+
+**Q: vLLM is not working with Axolotl**
+
+> A: We currently recommend torch 2.10 for use with `vllm`. Please ensure you use the right version. For Docker, please use the `main-py3.12-cu128-2.10.0` tag (note: torch 2.10 images are built with Python 3.12).
+
+**Q: FA2 2.8.0 `undefined symbol` runtime error on CUDA 12.4**
+
+> A: There seems to be a wheel issue with FA2 2.8.0 on CUDA 12.4. Try CUDA 12.6 instead or downgrade to FA2 2.7.4. Please refer to the upstream issue: https://github.com/Dao-AILab/flash-attention/issues/1717.
+
+**Q: Can we mix text and text+image datasets for VLM training?**
+
+> A: Yes, you can for newer VLM arch. The ones that would not work are LLaVA / Pixtral arch. If you notice one not working, please let us know!
+
+**Q: Why is `memory/max_*` different from `nvidia-smi`?**
+
+> A: We use `torch` APIs to retrieve this information. You can see https://docs.pytorch.org/docs/stable/notes/cuda.html#cuda-memory-management for more information.
+
 ### Chat templates
 
 **Q: `jinja2.exceptions.UndefinedError: 'dict object' has no attribute 'content' / 'role' / ____`**
@@ -49,10 +93,62 @@ description: Frequently asked questions
 
 > A: This is likely an empty turn.
 
-**Q: The EOS/EOT token is incorrectly being masked or not being masked.**
+**Q: The EOS token is incorrectly being masked or not being masked / `EOS token __ not found in chat template`.**
 
-> A: This is because of the mismatch between `tokenizer.eos_token` and EOS/EOT token in template. Please make sure to set `eos_token` under `special_tokens` to the same EOS/EOT token as in template.
+> A: There can be two reasons:
+
+> 1. This is because of the mismatch between `tokenizer.eos_token` and EOS token in template. Please make sure to set `eos_token: ` under `special_tokens: ` to the same EOS token as in template.
+
+> 2. The EOS token is not in the template. Please check if your template is correct. As an example, `phi_35` template does not use its dedicated EOS token `<|endoftext|>` at the end.
 
 **Q: "`chat_template` choice is `tokenizer_default` but tokenizer's `chat_template` is null. Please add a `chat_template` in tokenizer config"**
 
 > A: This is because the tokenizer does not have a chat template. Please add a chat template in the tokenizer config. See [chat_template](dataset-formats/conversation.qmd#chat-template) for more details.
+
+**Q: The EOT token(s) are incorrectly being masked or not being masked / `EOT token __ not found in chat template`.**
+
+> A: There can be two reasons:
+
+> 1. The EOT token is different from the EOS token and was not specified under `eot_tokens: `. Please set `eot_tokens: ` to the same EOT token(s) as in template.
+
+> 2. There is more than one EOT token per turn in the template. Please raise an issue with examples as we recognize this as an edge case.
+
+**Q: `EOT token encoding failed. Please check if the token is valid and can be encoded.`**
+
+> A: There could be some issue with the tokenizer or unicode encoding. Please raise an issue with examples with the EOT token & tokenizer causing the issue.
+
+**Q: `EOT token __ is encoded as multiple tokens.`**
+
+> A: This is because the EOT token is encoded as multiple tokens which can cause unexpected behavior. Please add it under `tokens: ` or (recommended) override unused added_tokens via `added_tokens_overrides: `.
+
+**Q: `Conflict between train_on_eos and train_on_eot. eos_token is in eot_tokens and train_on_eos != train_on_eot`**
+
+> A: This is because the EOS token is in the `eot_tokens: ` while mismatch between `train_on_eos: ` and `train_on_eot: `. This will cause one to override the other. Please ensure that `train_on_eos: ` and `train_on_eot: ` are the same or remove the EOS token from `eot_tokens: `.
+
+**Q: If `eot_tokens: ` is not provided, what happens?**
+
+> A: If `eot_tokens: ` is not provided, the default behavior is the same as before. EOS tokens used to delimit turns are masked/unmasked depending on whether the turn is trainable.
+
+> Internally, `eot_tokens: tokenizer.eos_token` and `train_on_eot: train_on_eos` (which defaults to `turn`). This transition helps clarify the naming and behavior of EOT/EOS tokens.
+
+**Q: `Data processing error: CAS service error`**
+
+> A: Try disabling XET with `export HF_HUB_DISABLE_XET=1`
+
+**Q: `torch._inductor.exc.LoweringException: NoValidChoicesError: No choices to select, please consider adding ATEN into max_autotune_gemm_backends config (defined in torch/_inductor/config.py) to allow at least one choice. `**
+
+> A: Depending on the version of torch, you may need to include this in your YAML:
+
+> ```yaml
+> flex_attn_compile_kwargs:
+>   dynamic: false
+>   mode: max-autotune-no-cudagraphs
+> ```
+
+**Q: `ValueError("Backward pass should have cleared tracker of all tensors")`
+
+> A: This may happen due to edge cases in using the modern OffloadActivations context manager for CUDA streams. If you encounter this error, you may have success using the naive implementation with `offload_activations: legacy` in your YAML.
+
+**Q: `Error parsing tool_calls arguments as JSON.`
+
+> A: There is an error parsing string arguments to a dict. Please check your dataset and the error message for more details.